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Merge branch 'develop' into features/JAL-653_JAL-1766_htslib_refseqsupport
2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while...
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2016-03-11 tcofoegbumerge
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2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter
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2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure...
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2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
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2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol
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2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
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2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests
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2016-02-26 tcofoegbuJAL-1994 fix for broken tests
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2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
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2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
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2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequences...
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2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
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2016-02-09 tcofoegbuJAL-1976 catch and handle OOM Error
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2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and...
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2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
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2016-02-09 tcofoegbuJAL-1957 deleted stale comment
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2016-02-09 tcofoegbumerge
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2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight...
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2016-01-29 tcofoegbuJAL-1979 refactor out duplicated similar block of code...
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2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output...
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2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe...
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2016-01-25 tcofoegbuJAL-1998 bugfix for division by zero error for PDB...
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2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation...
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2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triplet...
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbuJAL-1986 JAL-1996 separated out appletDeploment page...
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbuJAL-1994 bugfix in build.xml to prevent proguard from...
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2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Chooser...
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2016-01-11 tcofoegbumerge
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2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check...
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2016-01-07 tcofoegbumerge
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2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS...
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2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureChooser...
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2015-11-25 tcofoegbuJAL-1479 applet build debug
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2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
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2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS...
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2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference...
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2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mapping...
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2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS...
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2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous...
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2015-11-11 tcofoegbumerge of SIFTs Branch
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2015-11-11 tcofoegbumerge
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2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client...
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2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to...
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2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
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2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/SequenceI...
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2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
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2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add sourceDBRef...
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2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
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2015-10-28 tcofoegbuJAL-1952 bugfix
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2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for...
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2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
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2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman...
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2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
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2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDBRef...
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2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry
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2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable saving...
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2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings...
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2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated
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2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated
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2015-10-08 tcofoegbumerge
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2015-10-07 tcofoegbuJAL-1912 added documentation
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2015-10-05 tcofoegbuJAL-1912 house keeping
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2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable...
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2015-10-05 tcofoegbumerge
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2015-10-05 tcofoegbuJAL-1908 bugfix
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2015-10-05 tcofoegbumerge
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2015-10-05 tcofoegbuJAL-1726 updated test error msg
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2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo
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2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added...
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2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt...
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2015-09-30 tcofoegbuhouse keeping
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2015-09-30 tcofoegbuJAL-1860 house keeping
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2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB...
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2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other...
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2015-09-30 tcofoegbumerge
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2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries...
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2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent...
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2015-09-28 tcofoegbumerge
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2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSchemeI...
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2015-09-25 tcofoegbumerge
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2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file
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2015-09-25 tcofoegbumerge
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2015-09-25 tcofoegbuJAL-1860 disabled default enter behaviour on pdb search...
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2015-09-24 tcofoegbuJAL-1860 only allow enter key when valid selection...
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2015-09-24 tcofoegbuJAL-1860 keyboard operation of pdb sequence fetcher...
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2015-09-24 tcofoegbumerge
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2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal...
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2015-09-22 tcofoegbuJAL-1774 house keeping
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2015-09-21 tcofoegbumerge
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2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather...
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2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highlighte...
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2015-09-18 tcofoegbumerge
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2015-09-18 tcofoegbuJAL-1506 revised implementation to clear only selected...
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2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying...
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2015-09-16 tcofoegbumerge
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2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix
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