jalview.git
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature...
2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns...
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere...
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript...
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence...
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for...
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig...
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper
2017-11-30 Jim ProcterJAL-2849 release notes
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO

2017-11-30 Jim ProcterJAL-2849 fix
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
2017-11-28 Jim ProcterJAL-2740 release notes
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop
2017-11-28 Jim ProcterJAL-2827 release notes
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop
2017-11-28 Jim ProcterJAL-2842 release notes
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop
2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with...
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop
2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig...
2017-11-24 gmungocJAL-2808 update spike to latest
2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score...
2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_CO...
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present...
2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling
2017-11-23 gmungocJAL-2808 refactor conversion of table data to beans...
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array...
2017-11-22 gmungocJAL-2808 update conditions list on change of attribute...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
2017-11-22 gmungocJAL-2069 renamed helper method better
2017-11-22 gmungocJAL-2808 defer dispose to allow screen location to...
2017-11-22 gmungocJAL-2069 Javadoc added only
2017-11-22 gmungocJAL-1424 enhanced to report dynamic keys separately
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character...
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi...
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart...
2017-11-17 Jim ProcterJAL-2698 tidy release notes and whats new
2017-11-17 Jim ProcterJAL-2698 source code licencing
2017-11-17 Jim ProcterJAL-2698 tidy up release notes
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in...
2017-11-17 Jim ProcterJAL-2466 revised help text for sort by PID
2017-11-17 Jim ProcterJAL-2698 what’s new and release notes
2017-11-17 Jim ProcterJAL-2822 known defect for 2.10.3
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop
2017-11-17 Jim ProcterJAL-2841 JAL-2791 new known defect


2017-11-17 Jim ProcterJAL-2541 known defect
2017-11-17 Jim ProcterJAL-2684 clarify release notes
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop
2017-11-17 Jim ProcterJAL-2840 release notes
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837
2017-11-17 Jim ProcterJAL-2811 release note
2017-11-17 Jim ProcterJAL-2541 not in 2.10.3, JAL-2831 signed off.
2017-11-17 Jim ProcterJAL-2698 11th hour release today
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop
2017-11-17 gmungocJAL-2808 set (read-only) condition text field as disabled
2017-11-16 Jim ProcterJAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release...
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into...
2017-11-16 gmungocJAL-2069 fix minor bugs in variable setting
2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831
2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax
2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour...
2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move bug/JAL-2842
2017-11-16 gmungocJAL-2835 update test for array-valued attribute name
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute'
2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features...
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at...
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode...
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match...
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
2017-11-15 gmungocJAL-2835 code tidy (generic type constructors)
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