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jalview.git
2019-06-18 Ben SoaresJAL-3315 getdown_1_8_6 patch file. Needs careful applying. JAL-3315_getdown_1_8_6_update commit | commitdiff | tree | snapshot
2019-06-18 Ben SoaresJAL-3310 tidying unecessary files from getdown src... commit | commitdiff | tree | snapshot
2019-06-18 Ben SoaresMerge branch 'develop' into merge/JAL-3310_and_JAL... commit | commitdiff | tree | snapshot
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged commit | commitdiff | tree | snapshot
2019-06-17 Ben SoaresJAL-3310 Remove install4j from getdown-launcher.jar... commit | commitdiff | tree | snapshot
2019-06-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-06-17 Jim ProcterJAL-3111 rejigged release notes again commit | commitdiff | tree | snapshot
2019-06-17 Jim ProcterJAL-2975,JAL-2647,JAL-1767,JAL-2965, JAL-3111 updated... commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3295 pre-merged code with JAL-3295 branch which... commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3300 instant Splash screen on getdown commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3130 added a bit of gradle support for compiling... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 release date now 20th June. more release note... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 report time when Jalview was built (consider... commit | commitdiff | tree | snapshot
2019-06-13 Jalview Development... Merge branch 'releases/Release_2_11_Branch' into develop commit | commitdiff | tree | snapshot
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se... commit | commitdiff | tree | snapshot
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript commit | commitdiff | tree | snapshot
2019-06-13 Ben SoaresJAL-3295 Can now compile/run/debug in Eclipse with... commit | commitdiff | tree | snapshot
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... commit | commitdiff | tree | snapshot
2019-06-12 Ben SoaresJAL-3299 Fixed gitHash and gitBranch definitions in... commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3111 update release date placeholder commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 quick fix for build.gradle when pandoc not... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 building.html now generated by pandoc 'brew... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 added conversion of building.md to building... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'task/JAL-3248_rewritten_building_md_instr... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 Almost completed building doc commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 a bit more commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3225 removing slightly misleading rewrite of .class... commit | commitdiff | tree | snapshot
2019-06-06 Ben SoaresJAL-3225 Classpath now made in eclipse.classpath.file... commit | commitdiff | tree | snapshot
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3248 small edits commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3248 extra tl;dr commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresJAL-3248 Essential tl;dr :) commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 error logging if no ##reference found commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... Merge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3248 saving commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Object array cast missing commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'develop' into task/JAL-3247_JAL-3246_JAL... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3247 Added AppleScript based App to run old Jalview... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips... commit | commitdiff | tree | snapshot
2019-05-27 gmungocJAL-3141 test file in test folder not examples commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 One more error log fix commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test commit | commitdiff | tree | snapshot
2019-05-24 gmungocJAL-1988 Spanish typo corrección commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed tests commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... commit | commitdiff | tree | snapshot
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... commit | commitdiff | tree | snapshot
2019-05-22 gmungocJAL-3111 help file spelling correction commit | commitdiff | tree | snapshot
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... commit | commitdiff | tree | snapshot
2019-05-21 gmungocJAL-3273 small correction to expected result calculation commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresMerge branch 'task/JAL-3254_improved_max_memory_stack_s... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3247 Unix shell installer and tar archive corrected... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... commit | commitdiff | tree | snapshot
2019-05-13 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes... commit | commitdiff | tree | snapshot
2019-05-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown... commit | commitdiff | tree | snapshot
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