source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2007-06-04	jprocter	jMol jar applet dependency is now a build property... Release_2_3_BuildFix	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	Airbrush out Uniprot Release_2_3 Release_2_3_buildfix	commit \| commitdiff \| tree \| snapshot
2007-05-10	jprocter	ensure that only annotation referenced in given alignme...	commit \| commitdiff \| tree \| snapshot
2007-05-10	jprocter	documentation	commit \| commitdiff \| tree \| snapshot
2007-05-10	jprocter	bugfix on copy only referenced annotation in copy const...	commit \| commitdiff \| tree \| snapshot
2007-05-10	jprocter	fixed array index out of bounds when not removing align...	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	visibility setting	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	Keep record of last tooltip	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	Visible state of annotation	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	Add show all hidden menu	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	Dont duplicate annotations in multiple views	commit \| commitdiff \| tree \| snapshot
2007-05-10	amwaterhouse	save visible state of annotation	commit \| commitdiff \| tree \| snapshot
2007-05-09	jprocter	main method for running from command line and better...	commit \| commitdiff \| tree \| snapshot
2007-05-09	jprocter	reword jmol state storage	commit \| commitdiff \| tree \| snapshot
2007-05-09	jprocter	image size	commit \| commitdiff \| tree \| snapshot
2007-05-09	amwaterhouse	minor formatting of tooltip	commit \| commitdiff \| tree \| snapshot
2007-05-09	jprocter	new binary image	commit \| commitdiff \| tree \| snapshot
2007-05-09	amwaterhouse	9th may	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	removed cdna coding region 'new feature'	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	embl mapping and das feature retrieval	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	optimise order	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	multiple view pdb view association	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	formatting and wording	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	grammar, clarity and typos	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	typo	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	formatting	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	page setup entry	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	dialog box menu item naming	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	correct menu entry names and typos	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	PID distance measure and finishing sentence.	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	sort by score	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	rightalign and italic ids docs	commit \| commitdiff \| tree \| snapshot
2007-05-08	jprocter	added jmol documentation	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	check for null annotations	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	set picking label	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	state jmol 11.0.2	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	More issues resolved	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	instant update when seq colour is pressed	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	must specify .CA	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	remove system.out	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	small sphere for alpha carbon	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	addElement	commit \| commitdiff \| tree \| snapshot
2007-05-08	amwaterhouse	mirror image recitified	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	2.3 updates	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	2.3 updates	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Can compile and obfuscate applet with Jmol	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Image size must allow for scale height	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	dif is never used	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Allow for large font sizes	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	dont use gold highlights	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Max width for tooltip	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	still trying to prevent null painting	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Use id hash to add pdb mappings back to alignment	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	tIndex prevented deletion of last annotation	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Dont use gold colouring for highlight	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	Use PDB id for grouping mappings	commit \| commitdiff \| tree \| snapshot
2007-05-07	amwaterhouse	PDBViewer available if necessary	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Check bounds of loaded comp	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	remove system.out	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	added	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Add dbrefs before zero length features	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	lastCommand check	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Rename AppJMol to AppJmol - also AppJmol works with...	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Renamed to AppJmol	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	New example file for version 2.3	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	New example file for version 2.3	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Splash screen is not added using normal method, prevent...	commit \| commitdiff \| tree \| snapshot
2007-05-04	amwaterhouse	Annotations do not extend when full alignment is adjusted	commit \| commitdiff \| tree \| snapshot
2007-05-03	amwaterhouse	pdb id toUpperCase	commit \| commitdiff \| tree \| snapshot
2007-05-03	amwaterhouse	optimize repaints	commit \| commitdiff \| tree \| snapshot
2007-05-03	amwaterhouse	remove system.out	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	feature locations are retrieved by associated accession...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	feature locations are retrieved by associated accession...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	public debug report log message to gather any cases...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	fixed getIntervals bug to ensure it returns range from...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	documentation and proxy call to util.MapList.getToWord...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	extractScores menu item disabled for release	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	only return non-empty subsequences when getting selecti...	commit \| commitdiff \| tree \| snapshot
2007-05-02	amwaterhouse	Allow expansion of textarea for many sequence input	commit \| commitdiff \| tree \| snapshot
2007-05-02	amwaterhouse	AMSA input set padgaps true	commit \| commitdiff \| tree \| snapshot
2007-05-02	amwaterhouse	convert space to gapchar	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	undo stackempty error fix, refactored do and undo(...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	refactored do and undo() method to take array of alignm...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	copy only the sequence associated alignment annotation...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	subsequence bound checks and constructor for selectivel...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	return flag indicating if annotations were actually...	commit \| commitdiff \| tree \| snapshot
2007-05-02	jprocter	checks for negative start column in restrict	commit \| commitdiff \| tree \| snapshot
2007-05-02	amwaterhouse	Padgaps is false by default	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	setVisible flag sent to EditNameDialog	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Pad gaps method	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Make sure annots are alignment width	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	use jalviewLite to addFrame	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	remove system.out	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	set chains available	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Multiple views/hidden region/undo out of index bug	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	removeAlignmentAnnotation only removes annotation objec...	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	sort-by-score works of sequence-annotation, not alignme...	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Save seqset properties	commit \| commitdiff \| tree \| snapshot
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