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jalview.git
2017-01-20 gmungocJAL-2385 update slider settings when switching slider... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 fixup from last merge commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 check for null, spelling commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 restore group conservation slider setting... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into... commit | commitdiff | tree | snapshot
2017-01-18 gmungocJAL-2379 more realistic matrices for unit tests commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-1933 update threshold on focus lost in text field features/JAL-2295setChimeraAttributes commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2379 use SparseMatrix for encoded sequences, tidy... commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2379 SparseMatrix alternative to Matrix, both MatrixI commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix) commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 class renamed commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply() commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy... commit | commitdiff | tree | snapshot
2017-01-11 kiramtJAL-2316 Spanish message translations commit | commitdiff | tree | snapshot
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 commit | commitdiff | tree | snapshot
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... commit | commitdiff | tree | snapshot
2017-01-09 kiramtJAL-2316 Prevent applet from loading null links into... commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... commit | commitdiff | tree | snapshot
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup() commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID... commit | commitdiff | tree | snapshot
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2371 tests added commit | commitdiff | tree | snapshot
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff | tree | snapshot
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... commit | commitdiff | tree | snapshot
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes commit | commitdiff | tree | snapshot
2016-12-23 gmungocJAL-2120 JAL-2360 remove obsolete PDBViewer commit | commitdiff | tree | snapshot
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup commit | commitdiff | tree | snapshot
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 simplified code to create a new colour scheme commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 added a table to show score colours commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 comment only commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 tidy up, simplify isApplicableTo test commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 no RNAHelices colouring for groups commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2361 Blosum is enabled for peptide commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-1421 add types to Map commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 tidy spelling and file contents order only commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation commit | commitdiff | tree | snapshot
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a... commit | commitdiff | tree | snapshot
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... commit | commitdiff | tree | snapshot
2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible... commit | commitdiff | tree | snapshot
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name... commit | commitdiff | tree | snapshot
2016-12-16 kiramtJAL-2316 Added database name column to URL links table... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2346 ensure view updates when annotation options... commit | commitdiff | tree | snapshot
2016-12-16 Jim ProcterJAL-2360 report line number when threshold cannot be... commit | commitdiff | tree | snapshot
2016-12-16 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-1705 JAL-98 use SortedMap as more accurate type... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-1354 use i18n text for expected value commit | commitdiff | tree | snapshot
2016-12-15 kiramtJAL-2316 Changes following review. commit | commitdiff | tree | snapshot
2016-12-14 gmungocJAL-2360 test added commit | commitdiff | tree | snapshot
2016-12-14 gmungocJAL-2360 added check for null annotations array commit | commitdiff | tree | snapshot
2016-12-14 gmungocJAL-1544 JAL-2360 reformatted help page a bit nicer... commit | commitdiff | tree | snapshot
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop commit | commitdiff | tree | snapshot
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 commit | commitdiff | tree | snapshot
2016-12-13 gmungocJAL-2365 test for lightgray, darkgray not lightGray... commit | commitdiff | tree | snapshot
2016-12-13 gmungocJAL-2360 code formatting only and if-else changed to... commit | commitdiff | tree | snapshot
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee... commit | commitdiff | tree | snapshot
2016-12-13 kiramtJAL-2316 Documentation update commit | commitdiff | tree | snapshot
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu commit | commitdiff | tree | snapshot
2016-12-12 gmungocJAL-2360 simplify nucleotide flag, remove setter commit | commitdiff | tree | snapshot
2016-12-12 gmungocJAL-2361 use consistent colour names on menus commit | commitdiff | tree | snapshot
2016-12-12 gmungocJAL-1544 backgroud -> background commit | commitdiff | tree | snapshot
2016-12-12 kiramtJAL-2316 Added GUI checks for duplicate link ids commit | commitdiff | tree | snapshot
2016-12-12 kiramtJAL-2316 Unit test update to UrlLinkTableModel and... commit | commitdiff | tree | snapshot
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages commit | commitdiff | tree | snapshot
2016-12-12 kiramtJAL-2316 Missed change from previous checkin commit | commitdiff | tree | snapshot
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