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jalview.git
2024-04-17 Ben SoaresJAL-4059 Updates to SwingJS and JmolJS bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3 commit | commitdiff | tree | snapshot
2024-04-16 Ben SoaresJAL-4059 JAL-4395 Updated closure-compiler. Added local... commit | commitdiff | tree | snapshot
2024-04-16 Ben SoaresJAL-4059 Big improvements to jalviewjsProjectImport... commit | commitdiff | tree | snapshot
2024-04-15 Ben SoaresJAL-4059 Fixed Copy tasks merging site commit | commitdiff | tree | snapshot
2024-04-05 Ben SoaresJAL-4059 Fix jalviewjsLaunchTest for non-macos commit | commitdiff | tree | snapshot
2024-04-04 Ben SoaresJAL-4059 Fixed macOS timeoutscheduler and revert to... commit | commitdiff | tree | snapshot
2024-04-02 Ben SoaresMerge branch 'bug/JAL-4375_annotation_not_redrawn_corre... commit | commitdiff | tree | snapshot
2024-04-02 Ben SoaresJAL-4380 Improved annotation tooltips especially second... bug/JAL-4375_annotation_not_redrawn_correctly_when_scrolling_left-right_via_trackpad_in_wrap_mode commit | commitdiff | tree | snapshot
2024-04-02 Ben SoaresJAL-4059 Updated SwingJS, JmolJS libraries commit | commitdiff | tree | snapshot
2024-04-02 Ben SoaresJAL-4059 minor CSS fix commit | commitdiff | tree | snapshot
2024-03-20 Ben SoaresMerge branch 'bug/JAL-4375_annotation_not_redrawn_corre... commit | commitdiff | tree | snapshot
2024-03-15 Ben SoaresJAL-4059 Updated SwingJS and JSmol (March 2024). Fix... commit | commitdiff | tree | snapshot
2024-03-15 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... bug/JAL-4238_PAEs_not_being_shown_in_JalviewJS commit | commitdiff | tree | snapshot
2024-03-15 Ben SoaresJAL-4320 Improve the inputs and outputs dependencies... commit | commitdiff | tree | snapshot
2024-03-15 Ben SoaresJAL-3225 Force gradle version in eclipse settings commit | commitdiff | tree | snapshot
2024-02-26 Ben SoaresJAL-4381 Plausibly better division of line segment... commit | commitdiff | tree | snapshot
2024-02-23 Ben SoaresJAL-4381 For lineGraph line segments that should be... commit | commitdiff | tree | snapshot
2024-02-21 Ben SoaresJAL-4375 JAL-4381 Removal of AnnotationColouring and... commit | commitdiff | tree | snapshot
2024-02-20 Ben SoaresJAL-4380 Added information to annotation tooltips when... improvement/JAL-4381_dynamic_value_colouring_of_annotations commit | commitdiff | tree | snapshot
2024-02-20 Ben SoaresJAL-4375 Add an AnnotationColouringI interface, and... commit | commitdiff | tree | snapshot
2024-02-07 Ben SoaresJAL-4375 Pass through a flag to AnnotationRenderer... commit | commitdiff | tree | snapshot
2024-02-07 Ben SoaresJAL-4375 This extra clip isn't necessary commit | commitdiff | tree | snapshot
2024-02-07 Ben SoaresJAL-4375 Clipped label text in annotations to annotatio... commit | commitdiff | tree | snapshot
2024-02-02 Ben SoaresJAL-4375 I don't think turning off antialiasing is... commit | commitdiff | tree | snapshot
2024-02-02 Ben SoaresJAL-4375 Single width pixel artifacts appearing for... commit | commitdiff | tree | snapshot
2024-02-01 Ben SoaresJAL-4375 fix typo in property name commit | commitdiff | tree | snapshot
2024-02-01 Ben SoaresJAL-4375 Improved trackpad user experience for wrapped... commit | commitdiff | tree | snapshot
2024-01-31 Ben SoaresJAL-4375 More consistent calculation for dashed thresho... commit | commitdiff | tree | snapshot
2024-01-31 Ben SoaresJAL-4375 Different way of getting mouse wheel movement... commit | commitdiff | tree | snapshot
2024-01-31 Ben SoaresJAL-4375 Fix big sideways scroll from trackpad at begin... commit | commitdiff | tree | snapshot
2024-01-31 Ben SoaresJAL-4375 Fixed sensitivity of new more responsive left... commit | commitdiff | tree | snapshot
2024-01-31 Ben SoaresJAL-4375 Fixed the following when trackpad side-scrolli... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4356 release notes develop commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4356 update release notes for 2.11.3.3 commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 fixed tests commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 singleThread all tests commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4235_gradle_task_jalviewjsTranspi... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4235_gradle_task_ja... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4235_gradle_task_ja... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied... commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings... commit | commitdiff | tree | snapshot
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately commit | commitdiff | tree | snapshot
2024-01-05 Ben SoaresJAL-4328 Example html 'form' launch in examples.html commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4238 Marked where JalviewJS is hanging on 3DBeacons... commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4059 Added some more Platform.addJ2SDirectDatabaseC... commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4328 Move the examples links to a sensible place... commit | commitdiff | tree | snapshot
2023-12-19 Ben SoaresJAL-4290 Fixed one test commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 not quite working tests commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4059 Only run this once commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4059 Use namespaced query parameters in preference... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_figure_wi... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterJAL-4290 new CommandsTest.headlessOrGuiImageOutputTest... bug/JAL-4290_headless_alignment_figure_with_sse commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4356 update release notes commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4217 singleThread all tests commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Improvement to launch indicator commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Updated swingjs and removed spare library... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 bigger tighter test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 failing test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files... commit | commitdiff | tree | snapshot
2023-12-11 James ProcterJAL-4192 more specific info about versions needed commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 re-used random color code commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 bump RELEASE commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... commit | commitdiff | tree | snapshot
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