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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / schemes / ResidueProperties.java
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff
2024-05-13 Renia CorreyaJAL-4386 - Implementation of substitution matrix and... commit | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-11-13 Ben SoaresJAL-4019 small but important corrections to array order... commit | commitdiff
2022-11-13 Ben SoaresJAL-4019 improvement to short sequence nucleotide detec... commit | commitdiff
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... commit | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... commit | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... commit | commitdiff
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation commit | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables commit | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-02-17 gmungocJAL-2416 BLOSUM62 removed from ResidueProperties commit | commitdiff
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr... commit | commitdiff
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties commit | commitdiff
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... commit | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... commit | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory commit | commitdiff
2017-02-07 gmungocJAL-2398 corrected entry for C->R in Blosum62 matrix commit | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... commit | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... commit | commitdiff
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering... commit | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... commit | commitdiff
2015-12-22 gmungocJAL-1421 parameterised map constructor used commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... commit | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-01-07 Jim ProcterJAL-1483 register feature similarity model commit | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character commit | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release commit | commitdiff
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... commit | commitdiff
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop commit | commitdiff
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio... commit | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... commit | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 commit | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop commit | commitdiff
2013-06-17 Jim ProcterJAL-1027 fix errors in alternative codon table commit | commitdiff
2013-06-17 Jim ProcterJAL-1027 use alternative codon table in ResidueProperti... commit | commitdiff
2013-06-17 Jim ProcterJAL-529 - IUBMB nucleotide ambiguity codes and programm... commit | commitdiff
2012-12-07 jprocterrevised renderer and annotation model to support differ... commit | commitdiff
2012-12-07 jproctertyping commit | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA... commit | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. commit | commitdiff
2012-07-05 Anne MenardAdd support RNAML format commit | commitdiff
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop commit | commitdiff
2011-12-08 jprocter(JAL-1013) gap character index for each sequence alphabet commit | commitdiff
2011-12-08 jprocterJAL-1027 fixed up nucleotide subt matrix so it is symme... commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2010-04-14 jproctertodo and disable selection sharing between views on... commit | commitdiff
2009-08-21 jprocterasparagine is polar but not charged commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-11-12 jproctergracefully translate ambigous nucleotides as 'X' commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff
2007-08-08 jprocterhistidine should be midblue (noticed by Peter Knight... commit | commitdiff
2007-04-30 jprocterdssp 7-state to three state lookup commit | commitdiff
2007-04-11 jprocterfixed base lookup bug in dna pairwise alignment and... commit | commitdiff
2007-03-19 jprocternote about selenocystine. commit | commitdiff
2007-02-07 amwaterhouseFormatting commit | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space commit | commitdiff
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