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2012-11-17	jprocter	method to construct sequence mapping for matching positions...	commit \| commitdiff \| tree
2012-11-17	jprocter	convenience method for performing pairwise alignment	commit \| commitdiff \| tree
2012-11-17	jprocter	formatting and javadoc	commit \| commitdiff \| tree
2012-11-15	jprocter	remove java7 plugin dependency	commit \| commitdiff \| tree
2012-11-15	jprocter	don't set background colour for menu bar	commit \| commitdiff \| tree
2012-11-15	jprocter	allow .rnaml as a filename extension	commit \| commitdiff \| tree
2012-11-15	jprocter	comment on jalview.io.AlignFile architecture	commit \| commitdiff \| tree
2012-11-15	jprocter	source formatting	commit \| commitdiff \| tree
2012-11-15	jprocter	Merge branch 'develop' into menard	commit \| commitdiff \| tree
2012-11-13	jprocter	Merge branch 'master' into develop	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	final tweaks to help landing page	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	update footer for static page	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	tidy help	commit \| commitdiff \| tree
2012-11-09	jprocter	property to configure webstart image	commit \| commitdiff \| tree
2012-11-09	jprocter	tweak file association comment and make sure webstart...	commit \| commitdiff \| tree
2012-11-09	jprocter	push jalview v2.8 release date to monday 12th November	commit \| commitdiff \| tree
2012-11-09	jprocter	ga tracking, footers and footer link styles	commit \| commitdiff \| tree
2012-11-09	jprocter	more tweaking of static pages and rejigging applet...	commit \| commitdiff \| tree
2012-11-09	jprocter	tweak whats new again	commit \| commitdiff \| tree
2012-11-09	jprocter	tweaking welcome message and what's new	commit \| commitdiff \| tree
2012-11-09	jprocter	constructor takes settings from any existing feature...	commit \| commitdiff \| tree
2012-11-08	jprocter	JAL-1193 ensure the 'loadedComplete' method gets called...	commit \| commitdiff \| tree
2012-11-08	jprocter	update release notes for JAL-1202	commit \| commitdiff \| tree
2012-11-08	jprocter	remember to close input file!	commit \| commitdiff \| tree
2012-11-08	jprocter	tidy imports	commit \| commitdiff \| tree
2012-11-08	jprocter	embed links to major features in main page	commit \| commitdiff \| tree
2012-11-08	jprocter	tweak wording	commit \| commitdiff \| tree
2012-11-07	jprocter	patch broken link	commit \| commitdiff \| tree
2012-11-07	jprocter	and more tweaks.	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 more layout tweaks	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 tweak layout for applet page and allow monospace...	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 more tweaks to page layout	commit \| commitdiff \| tree
2012-11-07	jprocter	Jalview 2.8 release notes and whats new! text	commit \| commitdiff \| tree
2012-11-07	jprocter	updated release notes for Jalview Version 2.8	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 update pages to use new website design	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-957 manual update to applet authorlist - need to...	commit \| commitdiff \| tree
2012-10-31	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-31	jprocter	JAL-1130 fix gif palette (arggh!)	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 nice installer splashscreens and...	commit \| commitdiff \| tree
2012-10-30	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 fireworks editable huge jalview logo in RGB	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 updated installAnywhere program logos	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 preserved old installAnywhere installer logo...	commit \| commitdiff \| tree
2012-10-29	jprocter	JAL-1130 made background transparent for small logo...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 call setLoadingFromArchiveFinished(true) for...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 patch prevents JalviewJmolBinding from handling...	commit \| commitdiff \| tree
2012-10-22	jprocter	Jalview 2.8 Source Header	commit \| commitdiff \| tree
2012-10-04	jprocter	Merge branch 'develop' into Release_2_8_Branch	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 switch to simple REST interface to dbfetch...	commit \| commitdiff \| tree
2012-10-04	jprocter	avoid importing the mapping every time we parse a uniprot...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 tweak main() based test to allow DAS sources...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1188 - set the user agent to Jalview Desktop/$...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1064 JAL-671 make sure all buttons are disabled...	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	update release branch to v2.8	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1026 - insert a sensible default for proxy so Jalview...	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1183 JAL-343 - use dialog queue for JABA warning...	commit \| commitdiff \| tree
2012-10-02	jprocter	JAL-1185 patch NPE - create new group for subtree on...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 JAL-1137 messy hardcoding of author list to...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 JAL-1139 hardcode preferred height to logo...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 more robust loading code and different logos...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 dialog thread is only started after the splashscree...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1111 dialog flickers whilst example file starts...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1184 apparent deadlock when launching jalview on...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 showNews adds news discovery and display thread...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 use dialog queue for usage statistics prompt	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 dialog queue	commit \| commitdiff \| tree
2012-09-27	jprocter	JAL-1030 patch typo	commit \| commitdiff \| tree
2012-09-27	jprocter	JAL-1179 - regression from JAL-1030 patch implicitly...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1031 allow empty selections to pass through to...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1179 note and patch for exceptions raised when...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1010 write validated value back to text field to...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-970 JAL-1052 (comment about JAL-1140)	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-970 document interactive RNA secondary structure...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1173 - trap redraw buffer OOM errors. needs a test...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1173 try to catch OOMs when loading annotation...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1076 add note in documentation about Alt rather...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-1130 transparent big version for JNLP and file...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 revised applet parameter documentation to standardis...	commit \| commitdiff \| tree
2012-09-24	jprocter	formatting	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 normalise logo menu options in applet	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 enable logo display when normalise option selected	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-516 JAL-759 JAL-1066 group & group colourscheme...	commit \| commitdiff \| tree
2012-09-24	jprocter	only recalc group conservation after last sequence...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-516 JAL-759 JAL-1066 group & group colourscheme...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 JAL-966 refactor group/alignment associated...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-1130 remove lossy logo versions	commit \| commitdiff \| tree
2012-09-21	jprocter	Merge branch 'JAL-1130' into develop	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-849 try harder and wait for longer for JABAWS to...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1171 refactor code to allow gui update for global...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1165 visual delay whilst results are processed.	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1165 allow progress indicators on the web service...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1130 jalview spinning icon for web service dialog	commit \| commitdiff \| tree
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