runner/compbio/runner/_impl/Runners.java

   1 /* Copyright (c) 2009 Peter Troshin\r
   2  *  \r
   3  *  Jalview Web Services @version: 2.0     \r
   4  * \r
   5  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
   6  *  Apache License version 2 as published by the Apache Software Foundation\r
   7  * \r
   8  *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
   9  *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
  10  *  License for more details.\r
  11  * \r
  12  *  A copy of the license is in apache_license.txt. It is also available here:\r
  13  * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
  14  * \r
  15  * Any republication or derived work distributed in source code form\r
  16  * must include this copyright and license notice.\r
  17  */\r
  18 package compbio.runner._impl;\r
  19 \r
  20 public final class Runners {\r
  21 \r
  22         private Runners() {\r
  23         }\r
  24 \r
  25         public static Mcl getMclRunnable(String workDirectory) {\r
  26                 return new Mcl(workDirectory);\r
  27         }\r
  28 \r
  29         public static OB getOBRunnable(String workDirectory) {\r
  30                 return new OB(workDirectory);\r
  31         }\r
  32 \r
  33         public static Disembl getDisemblRunnable(String workDirectory) {\r
  34                 return new Disembl(workDirectory);\r
  35         }\r
  36 \r
  37         public static NetNglyc getNetNglycRunnable(String workDirectory) {\r
  38                 return new NetNglyc();\r
  39         }\r
  40 \r
  41         public static Ronn getRonnRunnable(String workDirectory) {\r
  42                 return new Ronn(workDirectory);\r
  43         }\r
  44 \r
  45         public static Tmhmm2 getTmhmm2Runnable(String workDirectory) {\r
  46                 return new Tmhmm2(workDirectory);\r
  47         }\r
  48 \r
  49         public static RPSBlast getRPSBlastRunnable(String workDirectory) {\r
  50                 return new RPSBlast(workDirectory);\r
  51         }\r
  52 \r
  53         public static BlastAll getBlastAllRunnable(String workDirectory) {\r
  54                 return new BlastAll(workDirectory);\r
  55         }\r
  56 \r
  57         public static PSIBlast getPSIBlastRunnable(String workDirectory) {\r
  58                 return new PSIBlast(workDirectory);\r
  59         }\r
  60 \r
  61 }\r