website/full_javadoc/compbio/engine/Configurator.html

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   7 Configurator\r
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   9 \r
  10 <META NAME="date" CONTENT="2011-08-12">\r
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  58 &nbsp;<A HREF="../../compbio/engine/ClusterJobId.html" title="class in compbio.engine"><B>PREV CLASS</B></A>&nbsp;\r
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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  88 <!-- ======== START OF CLASS DATA ======== -->\r
  89 <H2>\r
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  91 compbio.engine</FONT>\r
  92 <BR>\r
  93 Class Configurator</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.Configurator</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public class <B>Configurator</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 <HR>\r
 105 \r
 106 <P>\r
 107 <!-- =========== FIELD SUMMARY =========== -->\r
 108 \r
 109 <A NAME="field_summary"><!-- --></A>\r
 110 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 111 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 112 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 113 <B>Field Summary</B></FONT></TH>\r
 114 </TR>\r
 115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 116 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 117 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 118 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#CLUSTER_WORK_DIRECTORY">CLUSTER_WORK_DIRECTORY</A></B></CODE>\r
 119 \r
 120 <BR>\r
 121 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 122 </TR>\r
 123 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 124 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 125 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
 126 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#IS_CLUSTER_ENGINE_ENABLED">IS_CLUSTER_ENGINE_ENABLED</A></B></CODE>\r
 127 \r
 128 <BR>\r
 129 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 130 </TR>\r
 131 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 132 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 133 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
 134 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#IS_LOCAL_ENGINE_ENABLED">IS_LOCAL_ENGINE_ENABLED</A></B></CODE>\r
 135 \r
 136 <BR>\r
 137 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 138 </TR>\r
 139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 140 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 141 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 142 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#LOCAL_WORK_DIRECTORY">LOCAL_WORK_DIRECTORY</A></B></CODE>\r
 143 \r
 144 <BR>\r
 145 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 146 </TR>\r
 147 </TABLE>\r
 148 &nbsp;\r
 149 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 150 \r
 151 <A NAME="constructor_summary"><!-- --></A>\r
 152 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 153 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 154 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 155 <B>Constructor Summary</B></FONT></TH>\r
 156 </TR>\r
 157 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 158 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#Configurator()">Configurator</A></B>()</CODE>\r
 159 \r
 160 <BR>\r
 161 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 162 </TR>\r
 163 </TABLE>\r
 164 &nbsp;\r
 165 <!-- ========== METHOD SUMMARY =========== -->\r
 166 \r
 167 <A NAME="method_summary"><!-- --></A>\r
 168 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 169 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 170 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 171 <B>Method Summary</B></FONT></TH>\r
 172 </TR>\r
 173 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 174 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 175 <CODE>static\r
 176 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 177 <TR ALIGN="right" VALIGN="">\r
 178 <TD NOWRAP><FONT SIZE="-1">\r
 179 <CODE>&lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt;</CODE></FONT></TD>\r
 180 </TR>\r
 181 </TABLE>\r
 182 </CODE></FONT></TD>\r
 183 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable)</CODE>\r
 184 \r
 185 <BR>\r
 186 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 187 </TR>\r
 188 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 189 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 190 <CODE>static\r
 191 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 192 <TR ALIGN="right" VALIGN="">\r
 193 <TD NOWRAP><FONT SIZE="-1">\r
 194 <CODE>&lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt;</CODE></FONT></TD>\r
 195 </TR>\r
 196 </TABLE>\r
 197 </CODE></FONT></TD>\r
 198 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, compbio.engine.client.Executable.ExecProvider)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
 199                     <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)</CODE>\r
 200 \r
 201 <BR>\r
 202 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 203 </TR>\r
 204 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 205 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 206 <CODE>static\r
 207 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 208 <TR ALIGN="right" VALIGN="">\r
 209 <TD NOWRAP><FONT SIZE="-1">\r
 210 <CODE>&lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt;</CODE></FONT></TD>\r
 211 </TR>\r
 212 </TABLE>\r
 213 </CODE></FONT></TD>\r
 214 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, java.util.List)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
 215                     <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)</CODE>\r
 216 \r
 217 <BR>\r
 218 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 219 </TR>\r
 220 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 221 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 222 <CODE>static&nbsp;<A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>\r
 223 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(compbio.engine.client.ConfiguredExecutable)">getAsyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable)</CODE>\r
 224 \r
 225 <BR>\r
 226 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 227 </TR>\r
 228 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 229 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 230 <CODE>static&nbsp;<A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>\r
 231 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getAsyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable,\r
 232                <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)</CODE>\r
 233 \r
 234 <BR>\r
 235 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 236 </TR>\r
 237 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 238 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 239 <CODE>static&nbsp;<A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>\r
 240 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(java.lang.String)">getAsyncEngine</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
 241 \r
 242 <BR>\r
 243 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 244 </TR>\r
 245 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 246 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 247 <CODE>static&nbsp;<A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A></CODE></FONT></TD>\r
 248 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getSyncEngine(compbio.engine.client.ConfiguredExecutable)">getSyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable)</CODE>\r
 249 \r
 250 <BR>\r
 251 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 252 </TR>\r
 253 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 254 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 255 <CODE>static&nbsp;<A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A></CODE></FONT></TD>\r
 256 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getSyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getSyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable,\r
 257               <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)</CODE>\r
 258 \r
 259 <BR>\r
 260 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 261 </TR>\r
 262 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 263 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 264 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 265 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getWorkDirectory(java.lang.String)">getWorkDirectory</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
 266 \r
 267 <BR>\r
 268 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 269 </TR>\r
 270 </TABLE>\r
 271 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 272 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 273 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 274 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 275 </TR>\r
 276 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 277 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 278 </TR>\r
 279 </TABLE>\r
 280 &nbsp;\r
 281 <P>\r
 282 \r
 283 <!-- ============ FIELD DETAIL =========== -->\r
 284 \r
 285 <A NAME="field_detail"><!-- --></A>\r
 286 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 287 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 288 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 289 <B>Field Detail</B></FONT></TH>\r
 290 </TR>\r
 291 </TABLE>\r
 292 \r
 293 <A NAME="IS_LOCAL_ENGINE_ENABLED"><!-- --></A><H3>\r
 294 IS_LOCAL_ENGINE_ENABLED</H3>\r
 295 <PRE>\r
 296 public static final boolean <B>IS_LOCAL_ENGINE_ENABLED</B></PRE>\r
 297 <DL>\r
 298 <DL>\r
 299 </DL>\r
 300 </DL>\r
 301 <HR>\r
 302 \r
 303 <A NAME="IS_CLUSTER_ENGINE_ENABLED"><!-- --></A><H3>\r
 304 IS_CLUSTER_ENGINE_ENABLED</H3>\r
 305 <PRE>\r
 306 public static final boolean <B>IS_CLUSTER_ENGINE_ENABLED</B></PRE>\r
 307 <DL>\r
 308 <DL>\r
 309 </DL>\r
 310 </DL>\r
 311 <HR>\r
 312 \r
 313 <A NAME="LOCAL_WORK_DIRECTORY"><!-- --></A><H3>\r
 314 LOCAL_WORK_DIRECTORY</H3>\r
 315 <PRE>\r
 316 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>LOCAL_WORK_DIRECTORY</B></PRE>\r
 317 <DL>\r
 318 <DL>\r
 319 </DL>\r
 320 </DL>\r
 321 <HR>\r
 322 \r
 323 <A NAME="CLUSTER_WORK_DIRECTORY"><!-- --></A><H3>\r
 324 CLUSTER_WORK_DIRECTORY</H3>\r
 325 <PRE>\r
 326 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>CLUSTER_WORK_DIRECTORY</B></PRE>\r
 327 <DL>\r
 328 <DL>\r
 329 </DL>\r
 330 </DL>\r
 331 \r
 332 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 333 \r
 334 <A NAME="constructor_detail"><!-- --></A>\r
 335 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 336 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 337 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 338 <B>Constructor Detail</B></FONT></TH>\r
 339 </TR>\r
 340 </TABLE>\r
 341 \r
 342 <A NAME="Configurator()"><!-- --></A><H3>\r
 343 Configurator</H3>\r
 344 <PRE>\r
 345 public <B>Configurator</B>()</PRE>\r
 346 <DL>\r
 347 </DL>\r
 348 \r
 349 <!-- ============ METHOD DETAIL ========== -->\r
 350 \r
 351 <A NAME="method_detail"><!-- --></A>\r
 352 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 353 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 354 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 355 <B>Method Detail</B></FONT></TH>\r
 356 </TR>\r
 357 </TABLE>\r
 358 \r
 359 <A NAME="configureExecutable(compbio.engine.client.Executable)"><!-- --></A><H3>\r
 360 configureExecutable</H3>\r
 361 <PRE>\r
 362 public static &lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt; <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable)\r
 363                                                    throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 364 <DL>\r
 365 <DD><DL>\r
 366 \r
 367 <DT><B>Throws:</B>\r
 368 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>\r
 369 </DD>\r
 370 </DL>\r
 371 <HR>\r
 372 \r
 373 <A NAME="configureExecutable(compbio.engine.client.Executable, java.util.List)"><!-- --></A><H3>\r
 374 configureExecutable</H3>\r
 375 <PRE>\r
 376 public static &lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt; <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
 377                                                               <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)\r
 378                                                    throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 379 <DL>\r
 380 <DD><DL>\r
 381 \r
 382 <DT><B>Throws:</B>\r
 383 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>\r
 384 </DD>\r
 385 </DL>\r
 386 <HR>\r
 387 \r
 388 <A NAME="configureExecutable(compbio.engine.client.Executable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>\r
 389 configureExecutable</H3>\r
 390 <PRE>\r
 391 public static &lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt; <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
 392                                                               <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)\r
 393                                                    throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 394 <DL>\r
 395 <DD><DL>\r
 396 \r
 397 <DT><B>Throws:</B>\r
 398 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>\r
 399 </DD>\r
 400 </DL>\r
 401 <HR>\r
 402 \r
 403 <A NAME="getAsyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>\r
 404 getAsyncEngine</H3>\r
 405 <PRE>\r
 406 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable,\r
 407                                            <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)</PRE>\r
 408 <DL>\r
 409 <DD><DL>\r
 410 </DL>\r
 411 </DD>\r
 412 </DL>\r
 413 <HR>\r
 414 \r
 415 <A NAME="getSyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>\r
 416 getSyncEngine</H3>\r
 417 <PRE>\r
 418 public static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A> <B>getSyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable,\r
 419                                          <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider)\r
 420                                   throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 421 <DL>\r
 422 <DD><DL>\r
 423 \r
 424 <DT><B>Throws:</B>\r
 425 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>\r
 426 </DD>\r
 427 </DL>\r
 428 <HR>\r
 429 \r
 430 <A NAME="getAsyncEngine(compbio.engine.client.ConfiguredExecutable)"><!-- --></A><H3>\r
 431 getAsyncEngine</H3>\r
 432 <PRE>\r
 433 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable)</PRE>\r
 434 <DL>\r
 435 <DD><DL>\r
 436 </DL>\r
 437 </DD>\r
 438 </DL>\r
 439 <HR>\r
 440 \r
 441 <A NAME="getAsyncEngine(java.lang.String)"><!-- --></A><H3>\r
 442 getAsyncEngine</H3>\r
 443 <PRE>\r
 444 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</PRE>\r
 445 <DL>\r
 446 <DD><DL>\r
 447 </DL>\r
 448 </DD>\r
 449 </DL>\r
 450 <HR>\r
 451 \r
 452 <A NAME="getSyncEngine(compbio.engine.client.ConfiguredExecutable)"><!-- --></A><H3>\r
 453 getSyncEngine</H3>\r
 454 <PRE>\r
 455 public static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A> <B>getSyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;&nbsp;executable)\r
 456                                   throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 457 <DL>\r
 458 <DD><DL>\r
 459 \r
 460 <DT><B>Throws:</B>\r
 461 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>\r
 462 </DD>\r
 463 </DL>\r
 464 <HR>\r
 465 \r
 466 <A NAME="getWorkDirectory(java.lang.String)"><!-- --></A><H3>\r
 467 getWorkDirectory</H3>\r
 468 <PRE>\r
 469 public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getWorkDirectory</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</PRE>\r
 470 <DL>\r
 471 <DD><DL>\r
 472 </DL>\r
 473 </DD>\r
 474 </DL>\r
 475 <!-- ========= END OF CLASS DATA ========= -->\r
 476 <HR>\r
 477 \r
 478 \r
 479 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 480 <A NAME="navbar_bottom"><!-- --></A>\r
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 485 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 486 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 487   <TR ALIGN="center" VALIGN="top">\r
 488   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
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 491   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/Configurator.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
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