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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentI.java
2022-10-15
Jim Procter
JAL-2349 reusable contact map holder for SequenceI...
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commitdiff
2022-06-10
Jim Procter
JAL-4027 getter for contact matrices on the Alignment.
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diff to current
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
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diff to current
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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diff to current
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
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commitdiff
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diff to current
2018-09-10
gmungoc
JAL-3099 new method AlignmentI.getVisibleWidth()
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commitdiff
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diff to current
2018-02-21
kiramt
JAL-2778 Revert back to old synchronisation
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diff to current
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
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commitdiff
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diff to current
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
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commitdiff
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diff to current
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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commitdiff
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
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diff to current
2017-09-04
Jim Procter
JAL-2675 source license
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commitdiff
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diff to current
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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diff to current
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
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commitdiff
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diff to current
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
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commitdiff
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diff to current
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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diff to current
2017-03-10
kiramt
JAL-2437 Fixed reordering of sequences when hiding...
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commitdiff
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diff to current
2017-03-03
kiramt
JAL-2388 Initial removal of hidden cols/seqs out of...
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diff to current
2017-02-15
Jim Procter
JAL-2374 javadoc - qualify that sequence argument to...
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diff to current
2017-02-10
Jim Procter
Merge branch 'develop' into spike/matrix_annot
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diff to current
2017-01-09
gmungoc
JAL-2371 pull up isNucleotide to SequenceCollectionI
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diff to current
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
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diff to current
2017-01-05
gmungoc
JAL-2374 fix popup out by one and multiple groups bugs
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diff to current
2016-12-12
gmungoc
JAL-2360 simplify nucleotide flag, remove setter
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diff to current
2016-12-04
Jim Procter
JAL-2349 interfaces and logic for adding contact matric...
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diff to current
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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diff to current
2016-08-19
Jim Procter
JAL-2154 refactor setSequenceAt to replaceSequenceAt...
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diff to current
2016-07-18
Jim Procter
JAL-2145 documentation of getWidth()
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diff to current
2016-07-04
gmungoc
JAL-2110 unused method removed
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diff to current
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
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diff to current
2016-05-31
gmungoc
JAL-2023 adjustments to mappings added for split frame...
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commitdiff
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diff to current
2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
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commitdiff
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diff to current
2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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commitdiff
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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diff to current
2014-10-07
gmungoc
JAL-1264 wip
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-06-23
Jim Procter
JAL-1230 proxy method for synchronising internal Alignm...
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-07-03
jprocter
JAL-961 allow calcId to be specified independently...
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commitdiff
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diff to current
2012-06-13
jprocter
javatidy
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diff to current
2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
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diff to current
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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diff to current
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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commitdiff
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diff to current
2012-05-23
jprocter
JAL-961 - annotatable datamodel objects can be queried...
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diff to current
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
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diff to current
2011-04-21
jprocter
allow an alignment annotation row to be removed and...
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-06-03
jprocter
javadoc re JAL-554
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-29
jprocter
isAligned assertion (bug 0008144)
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commitdiff
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diff to current
2009-07-24
jprocter
insert annotation at specific position
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commitdiff
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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diff to current
2008-12-19
jprocter
left and right justify method
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diff to current
2008-12-05
jprocter
support for multiple accession retrieval from a databas...
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commitdiff
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diff to current
2008-11-12
jprocter
javadoc and new method to get alignment sequence index...
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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diff to current
2008-07-18
jprocter
allow findSeq to begin *after* a given sequence in...
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diff to current
2007-11-30
jprocter
case invariant matching of seqeunce feature to sequence...
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diff to current
2007-06-17
jprocter
AlignedCodonFrame holds mapping information between...
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diff to current
2007-05-02
jprocter
return flag indicating if annotations were actually...
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diff to current
2007-05-01
jprocter
javadoc
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diff to current
2007-05-01
jprocter
removeAlignmentAnnotation only removes annotation objec...
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diff to current
2007-04-27
jprocter
getProperties returns nullk for no properties
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diff to current
2007-04-27
jprocter
documentation and getProperties method
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2007-04-25
amwaterhouse
alignmentProperties added
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diff to current
2007-04-19
jprocter
javadoc note on padding AlignmentAnnotation to alignmen...
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diff to current
2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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diff to current
2007-04-02
amwaterhouse
Destroy alignment moved to finalize
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commitdiff
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diff to current
2007-04-02
amwaterhouse
Destroy aligment method added
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diff to current
2007-02-07
amwaterhouse
Formatting
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diff to current
2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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diff to current
2007-01-24
amwaterhouse
AdjustAnnotations needs position, number and insert
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commitdiff
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diff to current
2006-12-21
amwaterhouse
remove unnecessary import
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diff to current
2006-10-24
amwaterhouse
maxIdLength redundant, deleteCols, trimLeft, removeGaps...
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diff to current
2006-10-12
amwaterhouse
HiddenSequences now array, not hashtable
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diff to current
2006-10-06
amwaterhouse
AAFrequency optimized
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diff to current
2006-08-21
amwaterhouse
header updated
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diff to current
2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
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commitdiff
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diff to current
2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
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commitdiff
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diff to current
2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
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git://source.jalview.org / jalview.git / history