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[jalview.git] / src / jalview / datamodel / xdb / embl / EmblEntry.java

2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-03	Jim Procter	Merge branch 'documentation/JAL-2675_release2102b1...	blob \| commitdiff \| diff to current
2017-08-22	Jim Procter	JAL-1551 formatting	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-14	gmungoc	JAL-2598 Sequence.getSequence return a copy of the...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-25	gmungoc	JAL-2050 make SequenceFeature.score final, adjust const...	blob \| commitdiff \| diff to current
2017-05-08	gmungoc	JAL-2505 refactored SequenceFeature construction so...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-25	Jim Procter	Merge branch 'develop' into refactor/JAL-2106_sourceDbR...	blob \| commitdiff \| diff to current
2016-08-24	Jim Procter	JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...	blob \| commitdiff \| diff to current
2016-08-18	gmungoc	JAL-1855 fail gracefully if XML has no <sequence> element	blob \| commitdiff \| diff to current
2016-07-06	gmungoc	JAL-2110 fixes and tests for adding dbrefs to EMBL...	blob \| commitdiff \| diff to current
2016-07-01	gmungoc	JAL-2110 code/comment tidy	blob \| commitdiff \| diff to current
2016-06-30	gmungoc	JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...	blob \| commitdiff \| diff to current
2016-06-21	Jim Procter	Merge branch 'features/JAL-2110_crossRefDuplications...	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2113 tidy up canonicalisation of Uniprot xrefs...	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2113 tidy up canonicalisation of Uniprot xrefs...	blob \| commitdiff \| diff to current
2016-06-16	gmungoc	JAL-2112 optimisation of EMBL CDS parsing	blob \| commitdiff \| diff to current
2016-06-15	Jim Procter	Merge branch 'develop' into features/JAL-2110_crossRefD...	blob \| commitdiff \| diff to current
2016-06-14	gmungoc	JAL-2114 more helpful reporting of parse failures	blob \| commitdiff \| diff to current
2016-06-14	gmungoc	JAL-2110 ensure "UniProtKB/Swiss-Prot" dbrefs canonical...	blob \| commitdiff \| diff to current
2016-06-09	gmungoc	JAL-2110 work in progress	blob \| commitdiff \| diff to current
2016-05-26	gmungoc	JAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2	blob \| commitdiff \| diff to current
2016-05-23	gmungoc	JAL-2114 save 'raw' ENA location as a sequence feature...	blob \| commitdiff \| diff to current
2016-05-20	gmungoc	JAL-2113 embl_mapping.xml and code updated for EMBL...	blob \| commitdiff \| diff to current
2016-04-01	gmungoc	JAL-1705 include stop codon in mapped CDS range so...	blob \| commitdiff \| diff to current
2016-03-28	gmungoc	JAL-1705 Javadoc / debug output tweaks	blob \| commitdiff \| diff to current
2016-03-21	gmungoc	JAL-2029 further fixes to get correct xrefs and xrefs...	blob \| commitdiff \| diff to current
2016-03-21	gmungoc	JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-06	gmungoc	JAL-1421 generics used for leaner safer code	blob \| commitdiff \| diff to current
2015-05-12	gmungoc	JAL-1712 fixes/tests for Castor binding and 'show flank...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-24	jprocter	fix to cope with EMBL records containing a CDS fragment...	blob \| commitdiff \| diff to current
2009-06-19	jprocter	parent db references and mappings added to retrieved...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-02-22	jprocter	CDS segment index	blob \| commitdiff \| diff to current
2007-10-31	jprocter	fix parsing of embl entries like S75919 which have...	blob \| commitdiff \| diff to current
2007-09-29	jprocter	friendlier sequence names for protein products	blob \| commitdiff \| diff to current
2007-08-24	jprocter	todo comments	blob \| commitdiff \| diff to current
2007-07-31	jprocter	debugging cross references and duplicate sequence db...	blob \| commitdiff \| diff to current
2007-07-13	jprocter	debugged mappings and translated sequence recovery	blob \| commitdiff \| diff to current
2007-05-28	jprocter	prototype DBRef and Feature Type semantics (for annotat...	blob \| commitdiff \| diff to current
2007-05-02	jprocter	feature locations are retrieved by associated accession...	blob \| commitdiff \| diff to current
2007-04-24	jprocter	updated mapping for EMBL_Services_V1.1.xsd and tested...	blob \| commitdiff \| diff to current
2007-04-17	jprocter	ascii type	blob \| commitdiff \| diff to current
2007-04-12	jprocter	basic support for multi-exon CDS features	blob \| commitdiff \| diff to current
2007-03-23	jprocter	generalised feature attribute parsing slightly (no...	blob \| commitdiff \| diff to current
2007-03-19	jprocter	initial support for EMBL file parsing.	blob \| commitdiff \| diff to current

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