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2018-08-22	Jim Procter	JAL-2988 workaround for jalview save as dialogs - clear...	commit \| commitdiff \| tree
2018-08-22	Jim Procter	JAL-2988 JAL-2976 update to latest VAqua release: VAqua5	commit \| commitdiff \| tree
2018-08-01	Jim Procter	Merge branch 'task/JAL-3047_clover2104b1_cherrypick...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 don't set classes unconditionally (forgot...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 don’t let the makedist task complete if a...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 ‘cloverclasses’ build directory for instrumented...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 enable clover for testng	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 ignore clover output dir	commit \| commitdiff \| tree
2018-06-07	Jim Procter	JAL-3009 release notes	commit \| commitdiff \| tree
2018-06-07	Jim Procter	Merge branch 'bugs/JAL-3009_blockingNetworkThreads...	commit \| commitdiff \| tree
2018-06-07	Jim Procter	JAL-2999 what's new and tweak release notes order	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2999 refine release notes	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2999 release 2.10.4b1 on Thursday (promise!)	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 release notes	commit \| commitdiff \| tree
2018-06-06	Jim Procter	Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 revised TODO for JAL-3025	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 don’t output variant/original sequence as...	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 JAL-3017 uniprot XML schema included in mappings doc	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-1920 JAL-3017 use newline not <br/> in description...	commit \| commitdiff \| tree
2018-06-05	Jim Procter	JAL-3009 news reader thread should be in background...	commit \| commitdiff \| tree
2018-06-05	Jim Procter	JAL-3009 Identifiers.Org retrieval on background thread.	commit \| commitdiff \| tree
2018-06-04	Jim Procter	JAL-3017 parse multiple variant elements for uniprot...	commit \| commitdiff \| tree
2018-06-04	Jim Procter	JAL-2999 update release notes and patch date to 5th...	commit \| commitdiff \| tree
2018-06-02	Jim Procter	JAL-3017 parse multiple variant elements for uniprot...	commit \| commitdiff \| tree
2018-05-30	Jim Procter	JAL-2999 2.10.4b1 release 31st May	commit \| commitdiff \| tree
2018-05-26	Jim Procter	JAL-2999 release date for 2.10.4b1 set for 27th May...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'documentation/JAL-2999_r2104b1' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2992panelHeight' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-1460_dragndropWindows' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'feature/JAL-2994chimeraPath' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 clarify release notes - and mention that shortcuts...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-2994 add a few future release points for good measure...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 temp variable for clearer conditional and...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 javadoc	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-2999 issues resolved (or nearly so) for 2.10.4b1	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 tidied up the use of windows link file parser	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 more complete drag'n'drop debugging info and...	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 process .lnk files dragged to Jalview when...	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 new data flavor for URLs added belt-and-braces...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	fix for JAL-2991 - we could do better :/	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2999 release notes and version bump for jalview...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2895 replace $$Jalview-Version$$ in help.jhm with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 release notes	commit \| commitdiff \| tree
2018-05-10	Jim Procter	Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 basic test for Description from features with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 simplified logic and added corner cases for...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2906 update release date and release notes	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2931 patch IA paths for new build box	commit \| commitdiff \| tree
2018-05-09	Jim Procter	Merge branch 'patch/JAL-2976_vaqua4_fallback' into...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2976 fixed bad equivalence check and implemented...	commit \| commitdiff \| tree
2018-05-08	Jim Procter	JAL-2321 release notes	commit \| commitdiff \| tree
2018-05-08	Jim Procter	Merge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 patch test to ensure structures are actually...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 ensure default is ‘parseImmediately=true’	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 use configured values for structure derived...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 add secondary structure & temp factor if not...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 use StructureImportSettings singleton settings...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 isParseImmediately() allows the parse() method...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 allow JmolParser to be configured before parsing...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2906 apply GPLv3 license source	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2960 don’t override a swing method and create infinite...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	Merge branch 'releases/Release_2_10_4_Branch' of http...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2906 2.10.4 release for 8th May 2018	commit \| commitdiff \| tree
2018-05-04	Jim Procter	Merge branch 'bug/JAL-2899' into releases/Release_2_10_4_Branch	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2906 removed mention of experimental features,...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 patch NPE when trying to open Uniprot FTS	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2929 JAL-2922 release notes	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 typo in installAnywhere build for VAqua dependency	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2960 release notes	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2948 transfer features/annotation is now available...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2960 raise the structure view after adding structures...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 Vaqua fallback release notes JAL-2906	commit \| commitdiff \| tree
2018-05-04	Jim Procter	Merge branch 'patch/JAL-2976_vaqua4_fallback' into...	commit \| commitdiff \| tree
2018-05-02	Jim Procter	JAL-2976 fallback to Vaqua for Macs that don’t work...	commit \| commitdiff \| tree
2018-05-02	Jim Procter	JAL-2976 Vaqua(4) as a dependency	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2899 release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2925 release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for...	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2906 reformat release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2906 typo	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2944 revised docs and structure chooser screen...	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2899 colouring moved from SwingWorker to a background...	commit \| commitdiff \| tree
2018-04-30	Jim Procter	Merge branch 'bug/JAL-2899' into releases/Release_2_10_4_Branch	commit \| commitdiff \| tree
2018-04-30	Jim Procter	JAL-2906 release 2.10.4 on 1st May 2018	commit \| commitdiff \| tree
2018-04-25	Jim Procter	Merge branch 'features/JAL-2944_openStructuresInSelectedView...	commit \| commitdiff \| tree
2018-04-11	Jim Procter	JAL-2946 catch unexpected SIFTS mapping exceptions...	commit \| commitdiff \| tree
2018-04-09	Jim Procter	JAL-2944 ’new view’ and ‘add to view’ button rather...	commit \| commitdiff \| tree
2018-04-09	Jim Procter	JAL-1847 superpose checkbox in structure chooser	commit \| commitdiff \| tree
2018-04-09	Jim Procter	JAL-1847 JAL-2944 make superposition step a configurable...	commit \| commitdiff \| tree
2018-04-06	Jim Procter	failing test for JAL-2223	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2945 resolve model as PDB file. Need to verify...	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2945 failing test for structure mapping	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2945 formatting	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2945 provide access to last highlighted results	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2944 open selected structures in existing or a...	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2944 combo box to pick which viewer to load structures...	commit \| commitdiff \| tree
2018-04-05	Jim Procter	JAL-2944 methods to check existence and get a title...	commit \| commitdiff \| tree
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