| 2021-09-17 |
gmungoc | JAL-1260 refactored multi-line qualifier separators
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| 2021-09-17 |
gmungoc | JAL-1260 unit test for FileFormats updated for GenBank/ENA
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| 2021-09-17 |
gmungoc | JAL-1260 file formats and IdentifyFile updates for...
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| 2021-09-17 |
gmungoc | JAL-1260 refactored GenBank (and EMBL) flat file parser
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| 2021-09-16 |
gmungoc | JAL-3779 apply properties to all groups with given...
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commit | commitdiff | tree |
| 2021-09-16 |
gmungoc | JAL-3761 more consistent parameter naming
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commit | commitdiff | tree |
| 2021-09-16 |
gmungoc | JAL-3761 helper method reinstated to avoid code duplication
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| 2021-09-16 |
gmungoc | JAL-3761 locateInFrom/To revised with tests; unused...
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| 2021-09-16 |
gmungoc | JAL-3761 extra check that VCF feature is fully mappable...
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| 2021-09-16 |
gmungoc | JAL-3761 debugged and working (but not tidied) locateInFrom2/To2
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| 2021-09-16 |
gmungoc | JAL-3761 locateInFrom2 work in progress commit
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commit | commitdiff | tree |
| 2021-09-15 |
gmungoc | JAL-3761 unit test for MapList.countPos()
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commit | commitdiff | tree |
| 2021-09-15 |
gmungoc | JAL-3761 failing test, formatting, method renamed
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commit | commitdiff | tree |
| 2021-09-15 |
gmungoc | JAL-3761 failing tests for locateInFrom/To with overlapping...
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commit | commitdiff | tree |
| 2021-09-15 |
gmungoc | JAL-3751 only merge strictly contiguous ranges of mappings
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| 2021-09-15 |
gmungoc | JAL-3788 synchronize concurrent findColour() and alignmentCh...
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| 2021-09-15 |
gmungoc | JAL-3818 process Jmol callbacks in AWT thread
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commit | commitdiff | tree |
| 2021-09-02 |
gmungoc | JAL-1842 unit test updated for EnsemblGene feature...
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commit | commitdiff | tree |
| 2021-09-02 |
gmungoc | JAL-1842 adjust code to match changed semantics of...
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| 2021-09-02 |
gmungoc | JAL-3509 JAL-1842 minor tidying of code
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commit | commitdiff | tree |
| 2021-09-02 |
gmungoc | JAL-1842 remove redundant call to FeatureRenderer.featuresAd...
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commit | commitdiff | tree |
| 2021-09-02 |
gmungoc | JAL-3509 better placement of call to notifyFeaturesChanged()
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| 2021-09-02 |
gmungoc | JAL-3509 coerce RESNUM to hidden (really) after fetching...
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| 2021-02-18 |
gmungoc | JAL-3822 pass panel height and width to wrapped geometry...
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| 2021-02-18 |
gmungoc | JAL-2422 remove temporary patch (requires ChimeraX...
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commit | commitdiff | tree |
| 2021-02-05 |
gmungoc | JAL-2422 updated unit test for ChimeraX command change
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commit | commitdiff | tree |
| 2021-02-04 |
gmungoc | JAL-2422 a fix and a fudge for two failing ChimeraX...
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commit | commitdiff | tree |
| 2021-01-21 |
gmungoc | JAL-3038 corrected code that reads editable JComboBox...
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commit | commitdiff | tree |
| 2020-09-10 |
gmungoc | JAL-3518 removed unneeded override in ChimeraCommands
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commit | commitdiff | tree |
| 2020-09-10 |
gmungoc | JAL-2422 comments updated re ALTLOC handling
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| 2020-09-03 |
gmungoc | JAL-3648 resize annotation panel after dragging to...
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| 2020-08-31 |
gmungoc | JAL-3018 Ensembl reviewed REST version updated to 13.0
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| 2020-08-31 |
gmungoc | JAL-1191 use Cache.log for logging
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| 2020-08-31 |
gmungoc | JAL-1191 reduce logging level for warnings
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| 2020-08-24 |
gmungoc | JAL-3018 updated reviewed REST version to 12.0
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| 2020-08-18 |
gmungoc | JAL-2656 Java 8 compatible test for gzipped, refactored...
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| 2020-08-05 |
gmungoc | JAL-3692 unit test updated for ?gzip download endpoint URL
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commit | commitdiff | tree |
| 2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped...
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| 2020-07-27 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test...
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| 2020-07-24 |
gmungoc | JAL-3692 parse DE for description, and other refactoring...
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commit | commitdiff | tree |
| 2020-07-23 |
gmungoc | JAL-3692 URL tests updated
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| 2020-07-22 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: protein...
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| 2020-07-21 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
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| 2020-07-20 |
gmungoc | JAL-3597 slight tidying of code and Javadoc, passmark...
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commit | commitdiff | tree |
| 2020-07-14 |
gmungoc | JAL-1421 last change tidied up properly
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commit | commitdiff | tree |
| 2020-07-14 |
gmungoc | JAL-1421 types added to nameHash and nodeHash maps
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| 2020-07-14 |
gmungoc | JAL-3597 additional references nulled, bug in test...
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| 2020-07-07 |
gmungoc | JAL-1424 streamlined message checker, corrected applet...
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-1424 slight tidying of reporting
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3518 Spanish text for 'write features'
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| 2020-07-06 |
gmungoc | JAL-3570 JAL-3187 spanish translations for tabbed feature...
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3570 updated external help links
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| 2020-07-02 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for...
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commit | commitdiff | tree |
| 2020-07-02 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam
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commit | commitdiff | tree |
| 2020-06-29 |
gmungoc | JAL-3674 more finessed asynchronous structure commands
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commit | commitdiff | tree |
| 2020-06-29 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-06-29 |
gmungoc | JAL-3518 corrected pulled up focusView() command
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commit | commitdiff | tree |
| 2020-06-29 |
gmungoc | JAL-3518 corrected action on pulled up closeViewer()
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commit | commitdiff | tree |
| 2020-06-28 |
gmungoc | JAL-3551 PyMOL command constants tidied
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commit | commitdiff | tree |
| 2020-06-28 |
gmungoc | JAL-3551 fit to window (zoom) command for PyMOL
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commit | commitdiff | tree |
| 2020-06-26 |
gmungoc | JAL-3518 tidy up asynchronous structure command execution
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commit | commitdiff | tree |
| 2020-06-25 |
gmungoc | JAL-2010 unused prototype method removed
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commit | commitdiff | tree |
| 2020-06-25 |
gmungoc | JAL-3518 pull up [get|list]ResidueAttributes to StructureCom...
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commit | commitdiff | tree |
| 2020-06-23 |
gmungoc | JAL-3518 separation of ChimeraXManager, pull up of...
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commit | commitdiff | tree |
| 2020-06-23 |
gmungoc | JAL-3518 pull up closeViewer() and external viewer...
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commit | commitdiff | tree |
| 2020-06-01 |
gmungoc | JAL-3518 test result corrected
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commit | commitdiff | tree |
| 2020-06-01 |
gmungoc | JAL-3518 add alwaysRun = true [sigh]
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commit | commitdiff | tree |
| 2020-06-01 |
gmungoc | JAL-3518 more test coverage for structure commands
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commit | commitdiff | tree |
| 2020-05-29 |
gmungoc | JAL-2422 test updated
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commit | commitdiff | tree |
| 2020-05-29 |
gmungoc | Merge branch 'feature/JAL-3551Pymol' into develop
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commit | commitdiff | tree |
| 2020-05-29 |
gmungoc | JAL-3551 null pointer defence while structure files...
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commit | commitdiff | tree |
| 2020-05-28 |
gmungoc | JAL-3551 corrected Pymol open session command
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commit | commitdiff | tree |
| 2020-05-28 |
gmungoc | JAL-2422 correct ChimeraX save/open session commands...
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commit | commitdiff | tree |
| 2020-05-26 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-05-26 |
gmungoc | JAL-1889 disable test failing on build server
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commit | commitdiff | tree |
| 2020-05-26 |
gmungoc | JAL-3624 log when SIFTS mapping fails
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commit | commitdiff | tree |
| 2020-05-26 |
gmungoc | Merge branch 'feature/JAL-3624siftsInJS' into develop
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commit | commitdiff | tree |
| 2020-05-26 |
gmungoc | JAL-1761 pattern for structure viewer construction...
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commit | commitdiff | tree |
| 2020-05-21 |
gmungoc | JAL-3551 copy Jalview features to Pymol 'p' (with pull...
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commit | commitdiff | tree |
| 2020-05-21 |
gmungoc | JAL-2422 highlight ChimeraX selection (ChimeraX-1.0...
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commit | commitdiff | tree |
| 2020-05-20 |
gmungoc | JAL-3626 use Viewer.scriptWait() to send Jmol commands...
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commit | commitdiff | tree |
| 2020-05-19 |
gmungoc | JAL-3621 corrected sequence feature sort and test
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commit | commitdiff | tree |
| 2020-05-19 |
gmungoc | JAL-3621 corrected sequence feature sort and test
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commit | commitdiff | tree |
| 2020-05-19 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol
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commit | commitdiff | tree |
| 2020-05-19 |
gmungoc | JAL-3624 use temp file for SIFT download in JS, correct...
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3463 avoid Thread.sleep() as not supported in SwingJS
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3621 update to intervalstore v1.1
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3529 test updated for revised signature of getDBRefs()
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3613 remove debug code committed in error
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commit | commitdiff | tree |
| 2020-05-15 |
gmungoc | JAL-2422 JAL-3551 unit tests updated for code changes
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commit | commitdiff | tree |
| 2020-05-15 |
gmungoc | JAL-3619 default silently to Jmol if viewerType absent...
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commit | commitdiff | tree |
| 2020-05-15 |
gmungoc | JAL-3551 pull up Close Viewer dialog to base class
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commit | commitdiff | tree |
| 2020-05-15 |
gmungoc | Merge branch 'feature/JAL-3551Pymol' into feature/JAL...
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commit | commitdiff | tree |
| 2020-05-15 |
gmungoc | JAL-3551 raise label on ('highlight') structure residue...
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commit | commitdiff | tree |
| 2020-05-12 |
gmungoc | JAL-3518 tidy method, remove obsolete comment
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commit | commitdiff | tree |
| 2020-05-12 |
gmungoc | JAL-3518 failsafe check for null Jmol filename while...
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commit | commitdiff | tree |
| 2020-05-11 |
gmungoc | JAL-3551 concatenate colour by sequence commands for...
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commit | commitdiff | tree |
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