source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	jprocter <Jim Procter>
	Fri, 29 Aug 2008 11:09:53 +0000 (11:09 +0000)
committer	jprocter <Jim Procter>
	Fri, 29 Aug 2008 11:09:53 +0000 (11:09 +0000)
commit	2253f31565d4e96edffce2fac596e2ef0578d596
tree	b145e56475641b491d8de3ed43f30767ef7954e8	tree \| snapshot
parent	d1f6cf53b29322601c621da9a6b3cb09dd28235e	commit \| diff

licencing and format applied (eclipse)

556 files changed:

src/MCview/AppletPDBCanvas.java		diff \| blob \| history
src/MCview/AppletPDBViewer.java		diff \| blob \| history
src/MCview/Atom.java		diff \| blob \| history
src/MCview/Bond.java		diff \| blob \| history
src/MCview/MCMatrix.java		diff \| blob \| history
src/MCview/PDBCanvas.java		diff \| blob \| history
src/MCview/PDBChain.java		diff \| blob \| history
src/MCview/PDBViewer.java		diff \| blob \| history
src/MCview/PDBfile.java		diff \| blob \| history
src/MCview/Residue.java		diff \| blob \| history
src/MCview/Zsort.java		diff \| blob \| history
src/com/stevesoft/pat/AmpersandRule.java		diff \| blob \| history
src/com/stevesoft/pat/Any.java		diff \| blob \| history
src/com/stevesoft/pat/BackG.java		diff \| blob \| history
src/com/stevesoft/pat/BackMatch.java		diff \| blob \| history
src/com/stevesoft/pat/BackRefRule.java		diff \| blob \| history
src/com/stevesoft/pat/Backup.java		diff \| blob \| history
src/com/stevesoft/pat/BasicStringBufferLike.java		diff \| blob \| history
src/com/stevesoft/pat/Bits.java		diff \| blob \| history
src/com/stevesoft/pat/Boundary.java		diff \| blob \| history
src/com/stevesoft/pat/Bracket.java		diff \| blob \| history
src/com/stevesoft/pat/CaseMgr.java		diff \| blob \| history
src/com/stevesoft/pat/ChangeRule.java		diff \| blob \| history
src/com/stevesoft/pat/CodeRule.java		diff \| blob \| history
src/com/stevesoft/pat/Ctrl.java		diff \| blob \| history
src/com/stevesoft/pat/Custom.java		diff \| blob \| history
src/com/stevesoft/pat/CustomEndpoint.java		diff \| blob \| history
src/com/stevesoft/pat/DirFileRegex.java		diff \| blob \| history
src/com/stevesoft/pat/DotMulti.java		diff \| blob \| history
src/com/stevesoft/pat/End.java		diff \| blob \| history
src/com/stevesoft/pat/FastBracket.java		diff \| blob \| history
src/com/stevesoft/pat/FastMulti.java		diff \| blob \| history
src/com/stevesoft/pat/FileRegex.java		diff \| blob \| history
src/com/stevesoft/pat/Group.java		diff \| blob \| history
src/com/stevesoft/pat/LeftRule.java		diff \| blob \| history
src/com/stevesoft/pat/Multi.java		diff \| blob \| history
src/com/stevesoft/pat/MultiMin.java		diff \| blob \| history
src/com/stevesoft/pat/Multi_stage2.java		diff \| blob \| history
src/com/stevesoft/pat/NoPattern.java		diff \| blob \| history
src/com/stevesoft/pat/NonDirFileRegex.java		diff \| blob \| history
src/com/stevesoft/pat/NotImplementedError.java		diff \| blob \| history
src/com/stevesoft/pat/NullPattern.java		diff \| blob \| history
src/com/stevesoft/pat/NullRule.java		diff \| blob \| history
src/com/stevesoft/pat/Or.java		diff \| blob \| history
src/com/stevesoft/pat/OrMark.java		diff \| blob \| history
src/com/stevesoft/pat/PartialBuffer.java		diff \| blob \| history
src/com/stevesoft/pat/Pattern.java		diff \| blob \| history
src/com/stevesoft/pat/PatternSub.java		diff \| blob \| history
src/com/stevesoft/pat/PopRule.java		diff \| blob \| history
src/com/stevesoft/pat/Prop.java		diff \| blob \| history
src/com/stevesoft/pat/Pthings.java		diff \| blob \| history
src/com/stevesoft/pat/PushRule.java		diff \| blob \| history
src/com/stevesoft/pat/RBuffer.java		diff \| blob \| history
src/com/stevesoft/pat/Range.java		diff \| blob \| history
src/com/stevesoft/pat/RegOpt.java		diff \| blob \| history
src/com/stevesoft/pat/RegRes.java		diff \| blob \| history
src/com/stevesoft/pat/RegSyntax.java		diff \| blob \| history
src/com/stevesoft/pat/RegSyntaxError.java		diff \| blob \| history
src/com/stevesoft/pat/Regex.java		diff \| blob \| history
src/com/stevesoft/pat/RegexReader.java		diff \| blob \| history
src/com/stevesoft/pat/RegexTokenizer.java		diff \| blob \| history
src/com/stevesoft/pat/RegexWriter.java		diff \| blob \| history
src/com/stevesoft/pat/ReplaceRule.java		diff \| blob \| history
src/com/stevesoft/pat/Replacer.java		diff \| blob \| history
src/com/stevesoft/pat/RightRule.java		diff \| blob \| history
src/com/stevesoft/pat/Rthings.java		diff \| blob \| history
src/com/stevesoft/pat/RuleHolder.java		diff \| blob \| history
src/com/stevesoft/pat/Skip.java		diff \| blob \| history
src/com/stevesoft/pat/Skip2.java		diff \| blob \| history
src/com/stevesoft/pat/SkipBMH.java		diff \| blob \| history
src/com/stevesoft/pat/Skipped.java		diff \| blob \| history
src/com/stevesoft/pat/SpecialRule.java		diff \| blob \| history
src/com/stevesoft/pat/Start.java		diff \| blob \| history
src/com/stevesoft/pat/StrPos.java		diff \| blob \| history
src/com/stevesoft/pat/StringBufferLike.java		diff \| blob \| history
src/com/stevesoft/pat/StringLike.java		diff \| blob \| history
src/com/stevesoft/pat/StringRule.java		diff \| blob \| history
src/com/stevesoft/pat/SubMark.java		diff \| blob \| history
src/com/stevesoft/pat/TransPat.java		diff \| blob \| history
src/com/stevesoft/pat/Transformer.java		diff \| blob \| history
src/com/stevesoft/pat/UniValidator.java		diff \| blob \| history
src/com/stevesoft/pat/Validator.java		diff \| blob \| history
src/com/stevesoft/pat/WantMoreTextReplaceRule.java		diff \| blob \| history
src/com/stevesoft/pat/lookAhead.java		diff \| blob \| history
src/com/stevesoft/pat/oneChar.java		diff \| blob \| history
src/com/stevesoft/pat/parsePerl.java		diff \| blob \| history
src/com/stevesoft/pat/patInf.java		diff \| blob \| history
src/com/stevesoft/pat/patInt.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/CharArrayWrap.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/StringBufferWrap.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/StringWrap.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/WriterWrap.java		diff \| blob \| history
src/ext/vamsas/IRegistry.java		diff \| blob \| history
src/ext/vamsas/IRegistryService.java		diff \| blob \| history
src/ext/vamsas/IRegistryServiceLocator.java		diff \| blob \| history
src/ext/vamsas/Jpred.java		diff \| blob \| history
src/ext/vamsas/JpredService.java		diff \| blob \| history
src/ext/vamsas/JpredServiceLocator.java		diff \| blob \| history
src/ext/vamsas/JpredSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/MuscleWS.java		diff \| blob \| history
src/ext/vamsas/MuscleWSService.java		diff \| blob \| history
src/ext/vamsas/MuscleWSServiceLocator.java		diff \| blob \| history
src/ext/vamsas/MuscleWSSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/RegistryServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/SeqSearchI.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceLocator.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceService.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/ServiceHandle.java		diff \| blob \| history
src/ext/vamsas/ServiceHandles.java		diff \| blob \| history
src/jalview/analysis/AAFrequency.java		diff \| blob \| history
src/jalview/analysis/AlignSeq.java		diff \| blob \| history
src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/analysis/Conservation.java		diff \| blob \| history
src/jalview/analysis/CrossRef.java		diff \| blob \| history
src/jalview/analysis/Dna.java		diff \| blob \| history
src/jalview/analysis/Finder.java		diff \| blob \| history
src/jalview/analysis/NJTree.java		diff \| blob \| history
src/jalview/analysis/PCA.java		diff \| blob \| history
src/jalview/analysis/ParseProperties.java		diff \| blob \| history
src/jalview/analysis/SeqsetUtils.java		diff \| blob \| history
src/jalview/analysis/SequenceIdMatcher.java		diff \| blob \| history
src/jalview/appletgui/APopupMenu.java		diff \| blob \| history
src/jalview/appletgui/AlignFrame.java		diff \| blob \| history
src/jalview/appletgui/AlignViewport.java		diff \| blob \| history
src/jalview/appletgui/AlignmentPanel.java		diff \| blob \| history
src/jalview/appletgui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/appletgui/AnnotationLabels.java		diff \| blob \| history
src/jalview/appletgui/AnnotationPanel.java		diff \| blob \| history
src/jalview/appletgui/AppletJmol.java		diff \| blob \| history
src/jalview/appletgui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/appletgui/EditNameDialog.java		diff \| blob \| history
src/jalview/appletgui/EmbmenuFrame.java		diff \| blob \| history
src/jalview/appletgui/FeatureRenderer.java		diff \| blob \| history
src/jalview/appletgui/FeatureSettings.java		diff \| blob \| history
src/jalview/appletgui/Finder.java		diff \| blob \| history
src/jalview/appletgui/FontChooser.java		diff \| blob \| history
src/jalview/appletgui/IdCanvas.java		diff \| blob \| history
src/jalview/appletgui/IdPanel.java		diff \| blob \| history
src/jalview/appletgui/IdwidthAdjuster.java		diff \| blob \| history
src/jalview/appletgui/JVDialog.java		diff \| blob \| history
src/jalview/appletgui/OverviewPanel.java		diff \| blob \| history
src/jalview/appletgui/PCAPanel.java		diff \| blob \| history
src/jalview/appletgui/PaintRefresher.java		diff \| blob \| history
src/jalview/appletgui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/appletgui/RedundancyPanel.java		diff \| blob \| history
src/jalview/appletgui/RotatableCanvas.java		diff \| blob \| history
src/jalview/appletgui/ScalePanel.java		diff \| blob \| history
src/jalview/appletgui/SeqCanvas.java		diff \| blob \| history
src/jalview/appletgui/SeqPanel.java		diff \| blob \| history
src/jalview/appletgui/SequenceRenderer.java		diff \| blob \| history
src/jalview/appletgui/SliderPanel.java		diff \| blob \| history
src/jalview/appletgui/Tooltip.java		diff \| blob \| history
src/jalview/appletgui/TreeCanvas.java		diff \| blob \| history
src/jalview/appletgui/TreePanel.java		diff \| blob \| history
src/jalview/appletgui/UserDefinedColours.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/bin/JalviewLite.java		diff \| blob \| history
src/jalview/binding/Alignment.java		diff \| blob \| history
src/jalview/binding/Annotation.java		diff \| blob \| history
src/jalview/binding/AnnotationElement.java		diff \| blob \| history
src/jalview/binding/Colour.java		diff \| blob \| history
src/jalview/binding/Feature.java		diff \| blob \| history
src/jalview/binding/FeatureSettings.java		diff \| blob \| history
src/jalview/binding/Features.java		diff \| blob \| history
src/jalview/binding/JGroup.java		diff \| blob \| history
src/jalview/binding/JSeq.java		diff \| blob \| history
src/jalview/binding/JalviewModel.java		diff \| blob \| history
src/jalview/binding/JalviewModelSequence.java		diff \| blob \| history
src/jalview/binding/JalviewUserColours.java		diff \| blob \| history
src/jalview/binding/Pdbentry.java		diff \| blob \| history
src/jalview/binding/PdbentryItem.java		diff \| blob \| history
src/jalview/binding/Pdbids.java		diff \| blob \| history
src/jalview/binding/Property.java		diff \| blob \| history
src/jalview/binding/Sequence.java		diff \| blob \| history
src/jalview/binding/SequenceSet.java		diff \| blob \| history
src/jalview/binding/SequenceType.java		diff \| blob \| history
src/jalview/binding/Setting.java		diff \| blob \| history
src/jalview/binding/Tree.java		diff \| blob \| history
src/jalview/binding/UserColourScheme.java		diff \| blob \| history
src/jalview/binding/UserColours.java		diff \| blob \| history
src/jalview/binding/VAMSAS.java		diff \| blob \| history
src/jalview/binding/VamsasModel.java		diff \| blob \| history
src/jalview/binding/Viewport.java		diff \| blob \| history
src/jalview/commands/ChangeCaseCommand.java		diff \| blob \| history
src/jalview/commands/EditCommand.java		diff \| blob \| history
src/jalview/commands/OrderCommand.java		diff \| blob \| history
src/jalview/commands/RemoveGapColCommand.java		diff \| blob \| history
src/jalview/commands/RemoveGapsCommand.java		diff \| blob \| history
src/jalview/commands/SlideSequencesCommand.java		diff \| blob \| history
src/jalview/commands/TrimRegionCommand.java		diff \| blob \| history
src/jalview/datamodel/AlignedCodonFrame.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/AlignmentAnnotation.java		diff \| blob \| history
src/jalview/datamodel/AlignmentI.java		diff \| blob \| history
src/jalview/datamodel/AlignmentOrder.java		diff \| blob \| history
src/jalview/datamodel/AlignmentView.java		diff \| blob \| history
src/jalview/datamodel/Annotation.java		diff \| blob \| history
src/jalview/datamodel/BinaryNode.java		diff \| blob \| history
src/jalview/datamodel/BinarySequence.java		diff \| blob \| history
src/jalview/datamodel/CigarArray.java		diff \| blob \| history
src/jalview/datamodel/CigarBase.java		diff \| blob \| history
src/jalview/datamodel/CigarCigar.java		diff \| blob \| history
src/jalview/datamodel/CigarSimple.java		diff \| blob \| history
src/jalview/datamodel/ColumnSelection.java		diff \| blob \| history
src/jalview/datamodel/DBRefEntry.java		diff \| blob \| history
src/jalview/datamodel/DBRefSource.java		diff \| blob \| history
src/jalview/datamodel/FeatureProperties.java		diff \| blob \| history
src/jalview/datamodel/GraphLine.java		diff \| blob \| history
src/jalview/datamodel/HiddenSequences.java		diff \| blob \| history
src/jalview/datamodel/Mapping.java		diff \| blob \| history
src/jalview/datamodel/PDBEntry.java		diff \| blob \| history
src/jalview/datamodel/Provenance.java		diff \| blob \| history
src/jalview/datamodel/ProvenanceEntry.java		diff \| blob \| history
src/jalview/datamodel/SearchResults.java		diff \| blob \| history
src/jalview/datamodel/SeqCigar.java		diff \| blob \| history
src/jalview/datamodel/Sequence.java		diff \| blob \| history
src/jalview/datamodel/SequenceFeature.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/datamodel/SequenceI.java		diff \| blob \| history
src/jalview/datamodel/SequenceNode.java		diff \| blob \| history
src/jalview/datamodel/SequencePoint.java		diff \| blob \| history
src/jalview/datamodel/UniprotEntry.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/BasePosition.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblEntry.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblError.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeature.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFile.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblSequence.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/Qualifier.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationExporter.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AnnotationPanel.java		diff \| blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/gui/DasSourceBrowser.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/EPSOptions.java		diff \| blob \| history
src/jalview/gui/EditNameDialog.java		diff \| blob \| history
src/jalview/gui/FeatureRenderer.java		diff \| blob \| history
src/jalview/gui/FeatureSettings.java		diff \| blob \| history
src/jalview/gui/Finder.java		diff \| blob \| history
src/jalview/gui/FontChooser.java		diff \| blob \| history
src/jalview/gui/IProgressIndicator.java		diff \| blob \| history
src/jalview/gui/IdCanvas.java		diff \| blob \| history
src/jalview/gui/IdPanel.java		diff \| blob \| history
src/jalview/gui/IdwidthAdjuster.java		diff \| blob \| history
src/jalview/gui/Jalview2XML.java		diff \| blob \| history
src/jalview/gui/Jalview2XML_V1.java		diff \| blob \| history
src/jalview/gui/OOMWarning.java		diff \| blob \| history
src/jalview/gui/OverviewPanel.java		diff \| blob \| history
src/jalview/gui/PCAPanel.java		diff \| blob \| history
src/jalview/gui/PaintRefresher.java		diff \| blob \| history
src/jalview/gui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/Preferences.java		diff \| blob \| history
src/jalview/gui/RedundancyPanel.java		diff \| blob \| history
src/jalview/gui/RotatableCanvas.java		diff \| blob \| history
src/jalview/gui/ScalePanel.java		diff \| blob \| history
src/jalview/gui/ScriptWindow.java		diff \| blob \| history
src/jalview/gui/SeqCanvas.java		diff \| blob \| history
src/jalview/gui/SeqPanel.java		diff \| blob \| history
src/jalview/gui/SequenceFetcher.java		diff \| blob \| history
src/jalview/gui/SequenceRenderer.java		diff \| blob \| history
src/jalview/gui/SliderPanel.java		diff \| blob \| history
src/jalview/gui/SplashScreen.java		diff \| blob \| history
src/jalview/gui/TextColourChooser.java		diff \| blob \| history
src/jalview/gui/TreeCanvas.java		diff \| blob \| history
src/jalview/gui/TreePanel.java		diff \| blob \| history
src/jalview/gui/UserDefinedColours.java		diff \| blob \| history
src/jalview/gui/UserQuestionnaireCheck.java		diff \| blob \| history
src/jalview/gui/VamsasApplication.java		diff \| blob \| history
src/jalview/io/AMSAFile.java		diff \| blob \| history
src/jalview/io/AlignFile.java		diff \| blob \| history
src/jalview/io/AnnotationFile.java		diff \| blob \| history
src/jalview/io/AppletFormatAdapter.java		diff \| blob \| history
src/jalview/io/BLCFile.java		diff \| blob \| history
src/jalview/io/ClansFile.java		diff \| blob \| history
src/jalview/io/ClustalFile.java		diff \| blob \| history
src/jalview/io/DBRefFile.java		diff \| blob \| history
src/jalview/io/FastaFile.java		diff \| blob \| history
src/jalview/io/FeaturesFile.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/io/FileParse.java		diff \| blob \| history
src/jalview/io/FormatAdapter.java		diff \| blob \| history
src/jalview/io/HTMLOutput.java		diff \| blob \| history
src/jalview/io/IdentifyFile.java		diff \| blob \| history
src/jalview/io/JPredFile.java		diff \| blob \| history
src/jalview/io/JalviewFileChooser.java		diff \| blob \| history
src/jalview/io/JalviewFileFilter.java		diff \| blob \| history
src/jalview/io/JalviewFileView.java		diff \| blob \| history
src/jalview/io/JnetAnnotationMaker.java		diff \| blob \| history
src/jalview/io/MSFfile.java		diff \| blob \| history
src/jalview/io/MatrixFile.java		diff \| blob \| history
src/jalview/io/ModellerDescription.java		diff \| blob \| history
src/jalview/io/NewickFile.java		diff \| blob \| history
src/jalview/io/PIRFile.java		diff \| blob \| history
src/jalview/io/PfamFile.java		diff \| blob \| history
src/jalview/io/PileUpfile.java		diff \| blob \| history
src/jalview/io/StockholmFile.java		diff \| blob \| history
src/jalview/io/VamsasAppDatastore.java		diff \| blob \| history
src/jalview/io/WSWUBlastClient.java		diff \| blob \| history
src/jalview/io/vamsas/DatastoreItem.java		diff \| blob \| history
src/jalview/io/vamsas/Dbref.java		diff \| blob \| history
src/jalview/io/vamsas/LocalDocSyncObject.java		diff \| blob \| history
src/jalview/io/vamsas/Rangetype.java		diff \| blob \| history
src/jalview/io/vamsas/Sequencemapping.java		diff \| blob \| history
src/jalview/io/vamsas/Tree.java		diff \| blob \| history
src/jalview/jbgui/GAlignFrame.java		diff \| blob \| history
src/jalview/jbgui/GAlignmentPanel.java		diff \| blob \| history
src/jalview/jbgui/GCutAndPasteTransfer.java		diff \| blob \| history
src/jalview/jbgui/GDasSourceBrowser.java		diff \| blob \| history
src/jalview/jbgui/GDesktop.java		diff \| blob \| history
src/jalview/jbgui/GFinder.java		diff \| blob \| history
src/jalview/jbgui/GFontChooser.java		diff \| blob \| history
src/jalview/jbgui/GPCAPanel.java		diff \| blob \| history
src/jalview/jbgui/GPairwiseAlignPanel.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/jbgui/GSequenceLink.java		diff \| blob \| history
src/jalview/jbgui/GSliderPanel.java		diff \| blob \| history
src/jalview/jbgui/GStructureViewer.java		diff \| blob \| history
src/jalview/jbgui/GTreePanel.java		diff \| blob \| history
src/jalview/jbgui/GUserDefinedColours.java		diff \| blob \| history
src/jalview/jbgui/GWebserviceInfo.java		diff \| blob \| history
src/jalview/math/Matrix.java		diff \| blob \| history
src/jalview/math/RotatableMatrix.java		diff \| blob \| history
src/jalview/schemabinding/version2/AlcodMap.java		diff \| blob \| history
src/jalview/schemabinding/version2/Alcodon.java		diff \| blob \| history
src/jalview/schemabinding/version2/AlcodonFrame.java		diff \| blob \| history
src/jalview/schemabinding/version2/Annotation.java		diff \| blob \| history
src/jalview/schemabinding/version2/AnnotationColours.java		diff \| blob \| history
src/jalview/schemabinding/version2/AnnotationElement.java		diff \| blob \| history
src/jalview/schemabinding/version2/Colour.java		diff \| blob \| history
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