source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	jprocter <Jim Procter>
	Tue, 2 Jun 2009 12:11:24 +0000 (12:11 +0000)
committer	jprocter <Jim Procter>
	Tue, 2 Jun 2009 12:11:24 +0000 (12:11 +0000)
commit	28932bb93da81aff277d509d9a624a1119a4a979
tree	ee5a2b524f5f0219c11cf8f05d46960dedf4602e	tree \| snapshot
parent	69cd95e5f8eb35648cd2da8e9cda577cb6e46068	commit \| diff

applied 2009 GPL license

456 files changed:

build.xml		diff \| blob \| history
help/helpTOC.xml		diff \| blob \| history
jalview-jalopy.xml		diff \| blob \| history
resources/embl_mapping.xml		diff \| blob \| history
resources/uniprot_mapping.xml		diff \| blob \| history
schemas/JalviewUserColours.xsd		diff \| blob \| history
schemas/castor-mapping.xsd		diff \| blob \| history
schemas/jalview.xsd		diff \| blob \| history
schemas/jalviewJvV1.xsd		diff \| blob \| history
schemas/vamsas.xsd		diff \| blob \| history
schemas/vamsasJvV1.xsd		diff \| blob \| history
src/MCview/AppletPDBCanvas.java		diff \| blob \| history
src/MCview/AppletPDBViewer.java		diff \| blob \| history
src/MCview/Atom.java		diff \| blob \| history
src/MCview/Bond.java		diff \| blob \| history
src/MCview/MCMatrix.java		diff \| blob \| history
src/MCview/PDBCanvas.java		diff \| blob \| history
src/MCview/PDBChain.java		diff \| blob \| history
src/MCview/PDBViewer.java		diff \| blob \| history
src/MCview/PDBfile.java		diff \| blob \| history
src/MCview/Residue.java		diff \| blob \| history
src/MCview/Zsort.java		diff \| blob \| history
src/ext/vamsas/IRegistry.java		diff \| blob \| history
src/ext/vamsas/IRegistryService.java		diff \| blob \| history
src/ext/vamsas/IRegistryServiceLocator.java		diff \| blob \| history
src/ext/vamsas/Jpred.java		diff \| blob \| history
src/ext/vamsas/JpredService.java		diff \| blob \| history
src/ext/vamsas/JpredServiceLocator.java		diff \| blob \| history
src/ext/vamsas/JpredSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/MuscleWS.java		diff \| blob \| history
src/ext/vamsas/MuscleWSService.java		diff \| blob \| history
src/ext/vamsas/MuscleWSServiceLocator.java		diff \| blob \| history
src/ext/vamsas/MuscleWSSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/RegistryServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/SeqSearchI.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceLocator.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceService.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/ServiceHandle.java		diff \| blob \| history
src/ext/vamsas/ServiceHandles.java		diff \| blob \| history
src/jalview/analysis/AAFrequency.java		diff \| blob \| history
src/jalview/analysis/AlignSeq.java		diff \| blob \| history
src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/analysis/Conservation.java		diff \| blob \| history
src/jalview/analysis/CrossRef.java		diff \| blob \| history
src/jalview/analysis/Dna.java		diff \| blob \| history
src/jalview/analysis/Finder.java		diff \| blob \| history
src/jalview/analysis/NJTree.java		diff \| blob \| history
src/jalview/analysis/PCA.java		diff \| blob \| history
src/jalview/analysis/ParseProperties.java		diff \| blob \| history
src/jalview/analysis/SeqsetUtils.java		diff \| blob \| history
src/jalview/analysis/SequenceIdMatcher.java		diff \| blob \| history
src/jalview/appletgui/APopupMenu.java		diff \| blob \| history
src/jalview/appletgui/AlignFrame.java		diff \| blob \| history
src/jalview/appletgui/AlignViewport.java		diff \| blob \| history
src/jalview/appletgui/AlignmentPanel.java		diff \| blob \| history
src/jalview/appletgui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/appletgui/AnnotationLabels.java		diff \| blob \| history
src/jalview/appletgui/AnnotationPanel.java		diff \| blob \| history
src/jalview/appletgui/AppletJmol.java		diff \| blob \| history
src/jalview/appletgui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/appletgui/EditNameDialog.java		diff \| blob \| history
src/jalview/appletgui/EmbmenuFrame.java		diff \| blob \| history
src/jalview/appletgui/FeatureRenderer.java		diff \| blob \| history
src/jalview/appletgui/FeatureSettings.java		diff \| blob \| history
src/jalview/appletgui/Finder.java		diff \| blob \| history
src/jalview/appletgui/FontChooser.java		diff \| blob \| history
src/jalview/appletgui/IdCanvas.java		diff \| blob \| history
src/jalview/appletgui/IdPanel.java		diff \| blob \| history
src/jalview/appletgui/IdwidthAdjuster.java		diff \| blob \| history
src/jalview/appletgui/JVDialog.java		diff \| blob \| history
src/jalview/appletgui/OverviewPanel.java		diff \| blob \| history
src/jalview/appletgui/PCAPanel.java		diff \| blob \| history
src/jalview/appletgui/PaintRefresher.java		diff \| blob \| history
src/jalview/appletgui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/appletgui/RedundancyPanel.java		diff \| blob \| history
src/jalview/appletgui/RotatableCanvas.java		diff \| blob \| history
src/jalview/appletgui/ScalePanel.java		diff \| blob \| history
src/jalview/appletgui/SeqCanvas.java		diff \| blob \| history
src/jalview/appletgui/SeqPanel.java		diff \| blob \| history
src/jalview/appletgui/SequenceRenderer.java		diff \| blob \| history
src/jalview/appletgui/SliderPanel.java		diff \| blob \| history
src/jalview/appletgui/Tooltip.java		diff \| blob \| history
src/jalview/appletgui/TreeCanvas.java		diff \| blob \| history
src/jalview/appletgui/TreePanel.java		diff \| blob \| history
src/jalview/appletgui/UserDefinedColours.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/bin/JalviewLite.java		diff \| blob \| history
src/jalview/binding/Alignment.java		diff \| blob \| history
src/jalview/binding/Annotation.java		diff \| blob \| history
src/jalview/binding/AnnotationElement.java		diff \| blob \| history
src/jalview/binding/Colour.java		diff \| blob \| history
src/jalview/binding/Feature.java		diff \| blob \| history
src/jalview/binding/FeatureSettings.java		diff \| blob \| history
src/jalview/binding/Features.java		diff \| blob \| history
src/jalview/binding/JGroup.java		diff \| blob \| history
src/jalview/binding/JSeq.java		diff \| blob \| history
src/jalview/binding/JalviewModel.java		diff \| blob \| history
src/jalview/binding/JalviewModelSequence.java		diff \| blob \| history
src/jalview/binding/JalviewUserColours.java		diff \| blob \| history
src/jalview/binding/Pdbentry.java		diff \| blob \| history
src/jalview/binding/PdbentryItem.java		diff \| blob \| history
src/jalview/binding/Pdbids.java		diff \| blob \| history
src/jalview/binding/Property.java		diff \| blob \| history
src/jalview/binding/Sequence.java		diff \| blob \| history
src/jalview/binding/SequenceSet.java		diff \| blob \| history
src/jalview/binding/SequenceType.java		diff \| blob \| history
src/jalview/binding/Setting.java		diff \| blob \| history
src/jalview/binding/Tree.java		diff \| blob \| history
src/jalview/binding/UserColourScheme.java		diff \| blob \| history
src/jalview/binding/UserColours.java		diff \| blob \| history
src/jalview/binding/VAMSAS.java		diff \| blob \| history
src/jalview/binding/VamsasModel.java		diff \| blob \| history
src/jalview/binding/Viewport.java		diff \| blob \| history
src/jalview/commands/ChangeCaseCommand.java		diff \| blob \| history
src/jalview/commands/CommandI.java		diff \| blob \| history
src/jalview/commands/EditCommand.java		diff \| blob \| history
src/jalview/commands/OrderCommand.java		diff \| blob \| history
src/jalview/commands/RemoveGapColCommand.java		diff \| blob \| history
src/jalview/commands/RemoveGapsCommand.java		diff \| blob \| history
src/jalview/commands/SlideSequencesCommand.java		diff \| blob \| history
src/jalview/commands/TrimRegionCommand.java		diff \| blob \| history
src/jalview/datamodel/AlignedCodonFrame.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/AlignmentAnnotation.java		diff \| blob \| history
src/jalview/datamodel/AlignmentI.java		diff \| blob \| history
src/jalview/datamodel/AlignmentOrder.java		diff \| blob \| history
src/jalview/datamodel/AlignmentView.java		diff \| blob \| history
src/jalview/datamodel/Annotation.java		diff \| blob \| history
src/jalview/datamodel/BinaryNode.java		diff \| blob \| history
src/jalview/datamodel/BinarySequence.java		diff \| blob \| history
src/jalview/datamodel/CigarArray.java		diff \| blob \| history
src/jalview/datamodel/CigarBase.java		diff \| blob \| history
src/jalview/datamodel/CigarCigar.java		diff \| blob \| history
src/jalview/datamodel/CigarSimple.java		diff \| blob \| history
src/jalview/datamodel/ColumnSelection.java		diff \| blob \| history
src/jalview/datamodel/DBRefEntry.java		diff \| blob \| history
src/jalview/datamodel/DBRefSource.java		diff \| blob \| history
src/jalview/datamodel/FeatureProperties.java		diff \| blob \| history
src/jalview/datamodel/GraphLine.java		diff \| blob \| history
src/jalview/datamodel/HiddenSequences.java		diff \| blob \| history
src/jalview/datamodel/Mapping.java		diff \| blob \| history
src/jalview/datamodel/PDBEntry.java		diff \| blob \| history
src/jalview/datamodel/Provenance.java		diff \| blob \| history
src/jalview/datamodel/ProvenanceEntry.java		diff \| blob \| history
src/jalview/datamodel/SearchResults.java		diff \| blob \| history
src/jalview/datamodel/SeqCigar.java		diff \| blob \| history
src/jalview/datamodel/Sequence.java		diff \| blob \| history
src/jalview/datamodel/SequenceFeature.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/datamodel/SequenceI.java		diff \| blob \| history
src/jalview/datamodel/SequenceNode.java		diff \| blob \| history
src/jalview/datamodel/SequencePoint.java		diff \| blob \| history
src/jalview/datamodel/UniprotEntry.java		diff \| blob \| history
src/jalview/datamodel/UniprotFile.java		diff \| blob \| history
src/jalview/datamodel/UniprotProteinName.java		diff \| blob \| history
src/jalview/datamodel/UniprotSequence.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/BasePosition.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblEntry.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblError.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeature.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblFile.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/EmblSequence.java		diff \| blob \| history
src/jalview/datamodel/xdb/embl/Qualifier.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationExporter.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AnnotationPanel.java		diff \| blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/gui/DasSourceBrowser.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/EPSOptions.java		diff \| blob \| history
src/jalview/gui/EditNameDialog.java		diff \| blob \| history
src/jalview/gui/FeatureRenderer.java		diff \| blob \| history
src/jalview/gui/FeatureSettings.java		diff \| blob \| history
src/jalview/gui/Finder.java		diff \| blob \| history
src/jalview/gui/FontChooser.java		diff \| blob \| history
src/jalview/gui/IProgressIndicator.java		diff \| blob \| history
src/jalview/gui/IdCanvas.java		diff \| blob \| history
src/jalview/gui/IdPanel.java		diff \| blob \| history
src/jalview/gui/IdwidthAdjuster.java		diff \| blob \| history
src/jalview/gui/Jalview2XML.java		diff \| blob \| history
src/jalview/gui/Jalview2XML_V1.java		diff \| blob \| history
src/jalview/gui/OOMWarning.java		diff \| blob \| history
src/jalview/gui/OverviewPanel.java		diff \| blob \| history
src/jalview/gui/PCAPanel.java		diff \| blob \| history
src/jalview/gui/PaintRefresher.java		diff \| blob \| history
src/jalview/gui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/Preferences.java		diff \| blob \| history
src/jalview/gui/RedundancyPanel.java		diff \| blob \| history
src/jalview/gui/RotatableCanvas.java		diff \| blob \| history
src/jalview/gui/ScalePanel.java		diff \| blob \| history
src/jalview/gui/ScriptWindow.java		diff \| blob \| history
src/jalview/gui/SeqCanvas.java		diff \| blob \| history
src/jalview/gui/SeqPanel.java		diff \| blob \| history
src/jalview/gui/SequenceFetcher.java		diff \| blob \| history
src/jalview/gui/SequenceRenderer.java		diff \| blob \| history
src/jalview/gui/SliderPanel.java		diff \| blob \| history
src/jalview/gui/SplashScreen.java		diff \| blob \| history
src/jalview/gui/TextColourChooser.java		diff \| blob \| history
src/jalview/gui/TreeCanvas.java		diff \| blob \| history
src/jalview/gui/TreePanel.java		diff \| blob \| history
src/jalview/gui/UserDefinedColours.java		diff \| blob \| history
src/jalview/gui/UserQuestionnaireCheck.java		diff \| blob \| history
src/jalview/gui/VamsasApplication.java		diff \| blob \| history
src/jalview/gui/WebserviceInfo.java		diff \| blob \| history
src/jalview/io/AMSAFile.java		diff \| blob \| history
src/jalview/io/AlignFile.java		diff \| blob \| history
src/jalview/io/AnnotationFile.java		diff \| blob \| history
src/jalview/io/AppletFormatAdapter.java		diff \| blob \| history
src/jalview/io/BLCFile.java		diff \| blob \| history
src/jalview/io/ClansFile.java		diff \| blob \| history
src/jalview/io/ClustalFile.java		diff \| blob \| history
src/jalview/io/DBRefFile.java		diff \| blob \| history
src/jalview/io/FastaFile.java		diff \| blob \| history
src/jalview/io/FeaturesFile.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/io/FileParse.java		diff \| blob \| history
src/jalview/io/FormatAdapter.java		diff \| blob \| history
src/jalview/io/HTMLOutput.java		diff \| blob \| history
src/jalview/io/IdentifyFile.java		diff \| blob \| history
src/jalview/io/JPredFile.java		diff \| blob \| history
src/jalview/io/JalviewFileChooser.java		diff \| blob \| history
src/jalview/io/JalviewFileFilter.java		diff \| blob \| history
src/jalview/io/JalviewFileView.java		diff \| blob \| history
src/jalview/io/JnetAnnotationMaker.java		diff \| blob \| history
src/jalview/io/MSFfile.java		diff \| blob \| history
src/jalview/io/MatrixFile.java		diff \| blob \| history
src/jalview/io/ModellerDescription.java		diff \| blob \| history
src/jalview/io/NewickFile.java		diff \| blob \| history
src/jalview/io/PIRFile.java		diff \| blob \| history
src/jalview/io/PfamFile.java		diff \| blob \| history
src/jalview/io/PileUpfile.java		diff \| blob \| history
src/jalview/io/StockholmFile.java		diff \| blob \| history
src/jalview/io/VamsasAppDatastore.java		diff \| blob \| history
src/jalview/io/WSWUBlastClient.java		diff \| blob \| history
src/jalview/io/vamsas/DatastoreItem.java		diff \| blob \| history
src/jalview/io/vamsas/Dbref.java		diff \| blob \| history
src/jalview/io/vamsas/LocalDocSyncObject.java		diff \| blob \| history
src/jalview/io/vamsas/Rangetype.java		diff \| blob \| history
src/jalview/io/vamsas/Sequencemapping.java		diff \| blob \| history
src/jalview/io/vamsas/Tree.java		diff \| blob \| history
src/jalview/jbgui/GAlignFrame.java		diff \| blob \| history
src/jalview/jbgui/GAlignmentPanel.java		diff \| blob \| history
src/jalview/jbgui/GCutAndPasteTransfer.java		diff \| blob \| history
src/jalview/jbgui/GDasSourceBrowser.java		diff \| blob \| history
src/jalview/jbgui/GDesktop.java		diff \| blob \| history
src/jalview/jbgui/GFinder.java		diff \| blob \| history
src/jalview/jbgui/GFontChooser.java		diff \| blob \| history
src/jalview/jbgui/GPCAPanel.java		diff \| blob \| history
src/jalview/jbgui/GPairwiseAlignPanel.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/jbgui/GSequenceLink.java		diff \| blob \| history
src/jalview/jbgui/GSliderPanel.java		diff \| blob \| history
src/jalview/jbgui/GStructureViewer.java		diff \| blob \| history
src/jalview/jbgui/GTreePanel.java		diff \| blob \| history
src/jalview/jbgui/GUserDefinedColours.java		diff \| blob \| history
src/jalview/jbgui/GWebserviceInfo.java		diff \| blob \| history
src/jalview/math/Matrix.java		diff \| blob \| history
src/jalview/math/RotatableMatrix.java		diff \| blob \| history
src/jalview/schemabinding/version2/AlcodMap.java		diff \| blob \| history
src/jalview/schemabinding/version2/Alcodon.java		diff \| blob \| history
src/jalview/schemabinding/version2/AlcodonFrame.java		diff \| blob \| history
src/jalview/schemabinding/version2/Annotation.java		diff \| blob \| history
src/jalview/schemabinding/version2/AnnotationColours.java		diff \| blob \| history
src/jalview/schemabinding/version2/AnnotationElement.java		diff \| blob \| history
src/jalview/schemabinding/version2/Colour.java		diff \| blob \| history
src/jalview/schemabinding/version2/DBRef.java		diff \| blob \| history
src/jalview/schemabinding/version2/Feature.java		diff \| blob \| history
src/jalview/schemabinding/version2/FeatureSettings.java		diff \| blob \| history
src/jalview/schemabinding/version2/Features.java		diff \| blob \| history
src/jalview/schemabinding/version2/Group.java		diff \| blob \| history
src/jalview/schemabinding/version2/HiddenColumns.java		diff \| blob \| history
src/jalview/schemabinding/version2/JGroup.java		diff \| blob \| history
src/jalview/schemabinding/version2/JSeq.java		diff \| blob \| history
src/jalview/schemabinding/version2/JalviewModel.java		diff \| blob \| history
src/jalview/schemabinding/version2/JalviewModelSequence.java		diff \| blob \| history
src/jalview/schemabinding/version2/JalviewUserColours.java		diff \| blob \| history
src/jalview/schemabinding/version2/MapListFrom.java		diff \| blob \| history
src/jalview/schemabinding/version2/MapListTo.java		diff \| blob \| history
src/jalview/schemabinding/version2/MapListType.java		diff \| blob \| history
src/jalview/schemabinding/version2/Mapping.java		diff \| blob \| history
src/jalview/schemabinding/version2/MappingChoice.java		diff \| blob \| history
src/jalview/schemabinding/version2/OtherData.java		diff \| blob \| history
src/jalview/schemabinding/version2/Pdbentry.java		diff \| blob \| history
src/jalview/schemabinding/version2/PdbentryItem.java		diff \| blob \| history
src/jalview/schemabinding/version2/Pdbids.java		diff \| blob \| history
src/jalview/schemabinding/version2/Property.java		diff \| blob \| history
src/jalview/schemabinding/version2/Sequence.java		diff \| blob \| history
src/jalview/schemabinding/version2/SequenceSet.java		diff \| blob \| history
src/jalview/schemabinding/version2/SequenceSetProperties.java		diff \| blob \| history
src/jalview/schemabinding/version2/SequenceType.java		diff \| blob \| history
src/jalview/schemabinding/version2/Setting.java		diff \| blob \| history
src/jalview/schemabinding/version2/StructureState.java		diff \| blob \| history
src/jalview/schemabinding/version2/ThresholdLine.java		diff \| blob \| history
src/jalview/schemabinding/version2/Tree.java		diff \| blob \| history
src/jalview/schemabinding/version2/UserColourScheme.java		diff \| blob \| history
src/jalview/schemabinding/version2/UserColours.java		diff \| blob \| history
src/jalview/schemabinding/version2/VAMSAS.java		diff \| blob \| history
src/jalview/schemabinding/version2/VamsasModel.java		diff \| blob \| history
src/jalview/schemabinding/version2/Viewport.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java		diff \| blob \| history
src/jalview/schemes/AnnotationColourGradient.java		diff \| blob \| history
src/jalview/schemes/Blosum62ColourScheme.java		diff \| blob \| history
src/jalview/schemes/BuriedColourScheme.java		diff \| blob \| history
src/jalview/schemes/ClustalxColourScheme.java		diff \| blob \| history
src/jalview/schemes/ColourSchemeI.java		diff \| blob \| history
src/jalview/schemes/ColourSchemeProperty.java		diff \| blob \| history
src/jalview/schemes/Consensus.java		diff \| blob \| history
src/jalview/schemes/HelixColourScheme.java		diff \| blob \| history
src/jalview/schemes/HydrophobicColourScheme.java		diff \| blob \| history
src/jalview/schemes/NucleotideColourScheme.java		diff \| blob \| history
src/jalview/schemes/PIDColourScheme.java		diff \| blob \| history
src/jalview/schemes/ResidueColourScheme.java		diff \| blob \| history
src/jalview/schemes/ResidueProperties.java		diff \| blob \| history
src/jalview/schemes/ScoreColourScheme.java		diff \| blob \| history
src/jalview/schemes/ScoreMatrix.java		diff \| blob \| history
src/jalview/schemes/StrandColourScheme.java		diff \| blob \| history
src/jalview/schemes/TaylorColourScheme.java		diff \| blob \| history
src/jalview/schemes/TurnColourScheme.java		diff \| blob \| history
src/jalview/schemes/UserColourScheme.java		diff \| blob \| history
src/jalview/schemes/ZappoColourScheme.java		diff \| blob \| history
src/jalview/structure/SequenceListener.java		diff \| blob \| history
src/jalview/structure/StructureListener.java		diff \| blob \| history
src/jalview/structure/StructureMapping.java		diff \| blob \| history
src/jalview/structure/StructureSelectionManager.java		diff \| blob \| history
src/jalview/structure/VamsasListener.java		diff \| blob \| history
src/jalview/util/BrowserLauncher.java		diff \| blob \| history
src/jalview/util/Comparison.java		diff \| blob \| history
src/jalview/util/DBRefUtils.java		diff \| blob \| history
src/jalview/util/Format.java		diff \| blob \| history
src/jalview/util/ImageMaker.java		diff \| blob \| history
src/jalview/util/MapList.java		diff \| blob \| history
src/jalview/util/Platform.java		diff \| blob \| history
src/jalview/util/QuickSort.java		diff \| blob \| history
src/jalview/util/ShiftList.java		diff \| blob \| history
src/jalview/util/TableSorter.java		diff \| blob \| history
src/jalview/util/UrlLink.java		diff \| blob \| history
src/jalview/ws/DBRefFetcher.java		diff \| blob \| history
src/jalview/ws/DasSequenceFeatureFetcher.java		diff \| blob \| history
src/jalview/ws/Discoverer.java		diff \| blob \| history
src/jalview/ws/JPredClient.java		diff \| blob \| history
src/jalview/ws/JPredThread.java		diff \| blob \| history
src/jalview/ws/MsaWSClient.java		diff \| blob \| history
src/jalview/ws/MsaWSThread.java		diff \| blob \| history
src/jalview/ws/SeqSearchWSClient.java		diff \| blob \| history
src/jalview/ws/SeqSearchWSThread.java		diff \| blob \| history
src/jalview/ws/SequenceFetcher.java		diff \| blob \| history
src/jalview/ws/WSClient.java		diff \| blob \| history
src/jalview/ws/WSClientI.java		diff \| blob \| history
src/jalview/ws/WSThread.java		diff \| blob \| history
src/jalview/ws/dbsources/DasSequenceSource.java		diff \| blob \| history
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java		diff \| blob \| history
src/jalview/ws/dbsources/EmblCdsSouce.java		diff \| blob \| history
src/jalview/ws/dbsources/EmblSource.java		diff \| blob \| history
src/jalview/ws/dbsources/EmblXmlSource.java		diff \| blob \| history
src/jalview/ws/dbsources/GeneDbSource.java		diff \| blob \| history
src/jalview/ws/dbsources/Pdb.java		diff \| blob \| history
src/jalview/ws/dbsources/Pfam.java		diff \| blob \| history
src/jalview/ws/dbsources/PfamFull.java		diff \| blob \| history
src/jalview/ws/dbsources/PfamSeed.java		diff \| blob \| history
src/jalview/ws/dbsources/Uniprot.java		diff \| blob \| history
src/jalview/ws/dbsources/UnprotName.java		diff \| blob \| history
src/jalview/ws/dbsources/das/DasSequenceSourceListener.java		diff \| blob \| history
src/jalview/ws/ebi/EBIFetchClient.java		diff \| blob \| history
src/jalview/ws/seqfetcher/ASequenceFetcher.java		diff \| blob \| history
src/jalview/ws/seqfetcher/DbSourceProxy.java		diff \| blob \| history
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java		diff \| blob \| history
src/uk/ac/ebi/picr/model/CrossReference.java		diff \| blob \| history
src/uk/ac/ebi/picr/model/CrossReference_Helper.java		diff \| blob \| history
src/uk/ac/ebi/picr/model/UPEntry.java		diff \| blob \| history
src/uk/ac/ebi/picr/model/UPEntry_Helper.java		diff \| blob \| history
src/uk/ac/ebi/www/Data.java		diff \| blob \| history
src/uk/ac/ebi/www/InputParams.java		diff \| blob \| history
src/uk/ac/ebi/www/WSFile.java		diff \| blob \| history
src/uk/ac/ebi/www/WSWUBlast.java		diff \| blob \| history
src/uk/ac/ebi/www/WSWUBlastService.java		diff \| blob \| history
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java		diff \| blob \| history
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java		diff \| blob \| history
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java		diff \| blob \| history
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java		diff \| blob \| history
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java		diff \| blob \| history
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java		diff \| blob \| history
src/vamsas/IMsaWS.java		diff \| blob \| history
src/vamsas/objects/simple/Alignment.java		diff \| blob \| history
src/vamsas/objects/simple/Alignment_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/JpredResult.java		diff \| blob \| history
src/vamsas/objects/simple/JpredResult_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/MsaResult.java		diff \| blob \| history
src/vamsas/objects/simple/MsaResult_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Msfalignment.java		diff \| blob \| history
src/vamsas/objects/simple/Msfalignment_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Object.java		diff \| blob \| history
src/vamsas/objects/simple/Object_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Result.java		diff \| blob \| history
src/vamsas/objects/simple/Result_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Secstructpred.java		diff \| blob \| history
src/vamsas/objects/simple/Secstructpred_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/SeqSearchResult.java		diff \| blob \| history
src/vamsas/objects/simple/SeqSearchResult_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Sequence.java		diff \| blob \| history
src/vamsas/objects/simple/SequenceSet.java		diff \| blob \| history
src/vamsas/objects/simple/SequenceSet_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/Sequence_Helper.java		diff \| blob \| history
src/vamsas/objects/simple/WsJobId.java		diff \| blob \| history
src/vamsas/objects/simple/WsJobId_Helper.java		diff \| blob \| history
utils/InstallAnywhere/jalview_buildinstaller.xml		diff \| blob \| history
utils/help2Website.java		diff \| blob \| history

RSS Atom