source.jalview.org Git - jalview.git/commit

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Tue, 22 Dec 2015 09:10:07 +0000 (09:10 +0000)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Tue, 22 Dec 2015 09:10:07 +0000 (09:10 +0000)
commit	8f920d337154e092f5f9056ffde3cdf2735eca43
tree	e0ba09ebf5af81f2b612c1d21832b28a5224197f	tree \| snapshot
parent	da768251d307c7ce11283d72e0e522b2c5fac526	commit \| diff

JAL-653 GFF new/refactored helper classes

22 files changed:

examples/testdata/exonerateoutput.gff		diff \| blob \| history
examples/testdata/simpleGff3.gff		diff \| blob \| history
src/jalview/datamodel/Mapping.java		diff \| blob \| history
src/jalview/datamodel/MappingType.java	[new file with mode: 0644]	blob
src/jalview/io/FeaturesFile.java		diff \| blob \| history
src/jalview/io/gff/ExonerateHelper.java	[new file with mode: 0644]	blob
src/jalview/io/gff/Gff2Helper.java	[new file with mode: 0644]	blob
src/jalview/io/gff/Gff3Helper.java	[new file with mode: 0644]	blob
src/jalview/io/gff/GffHelperBase.java	[new file with mode: 0644]	blob
src/jalview/io/gff/GffHelperFactory.java	[new file with mode: 0644]	blob
src/jalview/io/gff/GffHelperI.java	[new file with mode: 0644]	blob
src/jalview/io/gff/InterProScanHelper.java	[new file with mode: 0644]	blob
src/jalview/util/StringUtils.java		diff \| blob \| history
test/jalview/datamodel/MappingTypeTest.java	[new file with mode: 0644]	blob
test/jalview/io/FeaturesFileTest.java		diff \| blob \| history
test/jalview/io/gff/ExonerateHelperTest.java	[new file with mode: 0644]	blob
test/jalview/io/gff/Gff3HelperTest.java	[new file with mode: 0644]	blob
test/jalview/io/gff/GffHelperBaseTest.java	[new file with mode: 0644]	blob
test/jalview/io/gff/GffHelperFactoryTest.java	[new file with mode: 0644]	blob
test/jalview/io/gff/GffTests.java	[moved from test/jalview/io/ExonerateGffTest.java with 86% similarity]	diff \| blob \| history
test/jalview/io/gff/InterProScanHelperTest.java	[new file with mode: 0644]	blob
test/jalview/util/StringUtilsTest.java		diff \| blob \| history