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javadoc
[jalview.git]
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examples
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2014-11-12
Jim Procter
JAL-674 new tests and deprecated tests for PDB mapping...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
tree
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commitdiff
2014-09-15
gmungoc
JAL-1542 script to show aligned positions of selected...
tree
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commitdiff
2014-09-12
gmungoc
JAL-1516 handle null annotations
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1516 Annotation row score output script for jalview...
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-28
Jim Procter
JAL-1509 use local deployJava
tree
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commitdiff
2014-05-28
Jim Procter
fix for JAL-1510 - workaround for IE9
tree
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commitdiff
2014-05-27
Jim Procter
JAL-1509 update deployJava.js from java.com/js/deployJa...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-04-27
Jim Procter
Merge branch 'JAL-952_rnahelix' into develop
tree
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commitdiff
2014-04-27
Jim Procter
JAL-952 JAL-1268 document TCoffee and RNA helices colou...
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1478 test to demonstrate bug
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
tree
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commitdiff
2014-02-17
Jim Procter
JAL-1445 groovy script demonstrating how to select...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'JAL-957_jbake' into r281_JAL-957
tree
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commitdiff
2014-01-29
Jim Procter
JAL-957 reinstate jnetfile parameter
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 patch broken comments in css
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1400 added explanation about signed/unsigned applet...
tree
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commitdiff
2014-01-29
Jim Procter
JAL-970 JAL-1400 fixed layout
tree
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commitdiff
2014-01-28
Jim Procter
JAL-957 reinstate the PDBfile parameter
tree
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commitdiff
2014-01-28
Jim Procter
JAL-957 neater boilerplate link to signed/unsigned...
tree
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commitdiff
2014-01-28
Jim Procter
Merge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
tree
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commitdiff
2014-01-28
Jim Procter
Merge branch 'JAL-957_jbake' into Release_2_8_Branch
tree
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commitdiff
2014-01-28
Jim Procter
JAL-957 permissions property for example pages (jbake...
tree
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commitdiff
2014-01-28
Jim Procter
JAL-957 unsigned applet demo pages created with jbake
tree
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commitdiff
2014-01-28
Jim Procter
JAL-957 new jbake-generated example pages
tree
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commitdiff
2014-01-18
jprocter
formatting
tree
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commitdiff
2014-01-18
jprocter
JAL-1400 numeric version numbers only for minimum jre...
tree
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commitdiff
2014-01-17
jprocter
JAL-1400 default JalviewLite build is signed applet...
tree
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commitdiff
2014-01-14
Jim Procter
JAL-1400 specify minimum 1.6 JRE
tree
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commitdiff
2014-01-13
Jalview build Manager
Merge branch 'Release_2_8_Branch' into WIP_fix_JAL...
WIP_fix_JAL-1423
tree
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commitdiff
2014-01-13
Jalview build Manager
JAL-1400 signed applets generally run with all permissi...
tree
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commitdiff
2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs_r281' into develop
tree
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commitdiff
2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into JAL-1422_srs_r281
tree
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commitdiff
2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into Release_2_8_Branch
tree
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commitdiff
2014-01-13
Jim Procter
JAL-1422 remove SRS and expasy links and replace with...
tree
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commitdiff
2013-11-26
Jim Procter
Merge branch 'testMerge' into trialMergeDev
tree
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commitdiff
2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into testMerge
tree
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commitdiff
2013-11-26
Jim Procter
sandbox permissions
tree
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commitdiff
2013-11-26
Jim Procter
new required parameter for deploying the applet
tree
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into develop
tree
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_1_Branch
tree
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commitdiff
2013-11-05
Jim Procter
JAL-1400 found a fix for the sandbox exception - need...
tree
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commitdiff
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
tree
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commitdiff
2013-08-27
Daniel Barton
JAL-1358 RNAStructExportImport test file mirrors Disord...
tree
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commitdiff
2013-07-09
Jim Procter
Merge branch 'JAL-895/reopen' into develop
tree
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commitdiff
2013-07-09
Jim Procter
Merge branch 'JAL-895/reopen' into Release_2_8_1_Branch
tree
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commitdiff
2013-07-09
Jim Procter
JAL-895 - patch example files with correct Fe positions
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'JAL-1294_iupredexportimport' into develop
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 store graphline for individual annota...
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
tree
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commitdiff
2013-06-07
Jim Procter
JAL-724 JAL-715 refactor and create new test for RSBS...
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1300 test and example data for parsing annotation...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294
tree
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commitdiff
2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
tree
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commitdiff
2013-02-06
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
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commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
tree
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commitdiff
2013-01-18
jprocter
Merge branch 'JAL-1254-hotfix' into develop
tree
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commitdiff
2012-11-21
jprocter
valid URLs in website menu frame and fixed GA code
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-11-12
jprocter
update footer for static page
tree
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commitdiff
2012-11-09
jprocter
ga tracking, footers and footer link styles
tree
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commitdiff
2012-11-09
jprocter
more tweaking of static pages and rejigging applet...
tree
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commitdiff
2012-11-07
jprocter
and more tweaks.
tree
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commitdiff
2012-11-07
jprocter
JAL-1201 more layout tweaks
tree
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commitdiff
2012-11-07
jprocter
JAL-1201 tweak layout for applet page and allow monospa...
tree
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commitdiff
2012-11-07
jprocter
JAL-1201 more tweaks to page layout
tree
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commitdiff
2012-11-07
jprocter
JAL-1201 update pages to use new website design
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
tree
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commitdiff
2012-09-06
jprocter
merge new 2.7.1 and 2.8 features into one
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 test Annotate3D methods for SAM Riboswitch...
tree
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commitdiff
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
tree
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commitdiff
2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into develop
tree
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commitdiff
2011-11-04
jprocter
(JAL-980) use proper release number for Jmol libs ...
tree
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commitdiff
2011-11-04
jprocter
(JAL-980) update Jmol library to 12.2.16452 (built...
tree
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commitdiff
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
tree
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commitdiff
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
tree
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commitdiff
2011-10-20
jprocter
(JAL-963) jalviewLite RNA alignment example (reusing...
tree
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commitdiff
2011-10-14
jprocter
(JAL-958) documented normalised sequence logo parameter
tree
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commitdiff
2011-09-28
jprocter
broken link. rearranged opening pg
tree
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commitdiff
2011-09-27
jprocter
JAL-944 - replaced stale PFAM links for 2.7 release...
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-09-23
jprocter
debugged example file again - old version had view...
tree
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commitdiff
2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
tree
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commitdiff
2011-09-14
jprocter
JAL-931 - groovy test harness code.
tree
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commitdiff
2011-09-14
jprocter
test data for JAL-701
tree
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commitdiff
2011-09-05
jprocter
note about ensuring callers of loadAlignment(..) save...
tree
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commitdiff
2011-08-18
jprocter
testdata for JAL-701 and JAL-908
tree
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commitdiff
2011-08-18
jprocter
JAL-907 testdata for JAL-701
tree
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commitdiff
2011-08-18
jprocter
JAL-907 - test data directory readme
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commitdiff
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