javadoc
[jalview.git] / examples /
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping...
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected...
2014-09-12 gmungocJAL-1516 handle null annotations
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview...
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-28 Jim ProcterJAL-1509 use local deployJava
2014-05-28 Jim Procterfix for JAL-1510 - workaround for IE9
2014-05-27 Jim ProcterJAL-1509 update deployJava.js from java.com/js/deployJa...
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop
2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices colou...
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-17 Jim ProcterJAL-1445 groovy script demonstrating how to select...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-02-03 Jim ProcterMerge branch 'JAL-957_jbake' into r281_JAL-957
2014-01-29 Jim ProcterJAL-957 reinstate jnetfile parameter
2014-01-29 Jim ProcterJAL-1432 patch broken comments in css
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet...
2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout
2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter
2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned...
2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake...
2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake
2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages
2014-01-18 jprocterformatting
2014-01-18 jprocterJAL-1400 numeric version numbers only for minimum jre...
2014-01-17 jprocterJAL-1400 default JalviewLite build is signed applet...
2014-01-14 Jim ProcterJAL-1400 specify minimum 1.6 JRE
2014-01-13 Jalview build ManagerMerge branch 'Release_2_8_Branch' into WIP_fix_JAL... WIP_fix_JAL-1423
2014-01-13 Jalview build ManagerJAL-1400 signed applets generally run with all permissi...
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into develop
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
2014-01-13 Jim ProcterJAL-1422 remove SRS and expasy links and replace with...
2013-11-26 Jim ProcterMerge branch 'testMerge' into trialMergeDev
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into testMerge
2013-11-26 Jim Proctersandbox permissions
2013-11-26 Jim Procternew required parameter for deploying the applet
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch
2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord...
2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into develop
2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into Release_2_8_1_Branch
2013-07-09 Jim ProcterJAL-895 - patch example files with correct Fe positions
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota...
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS...
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-05-24 Jim ProcterJAL-1300 test and example data for parsing annotation...
2013-05-24 Jim ProcterJAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test
2013-02-06 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class...
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop
2012-11-21 jproctervalid URLs in website menu frame and fixed GA code
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-12 jprocterupdate footer for static page
2012-11-09 jprocterga tracking, footers and footer link styles
2012-11-09 jproctermore tweaking of static pages and rejigging applet...
2012-11-07 jprocterand more tweaks.
2012-11-07 jprocterJAL-1201 more layout tweaks
2012-11-07 jprocterJAL-1201 tweak layout for applet page and allow monospa...
2012-11-07 jprocterJAL-1201 more tweaks to page layout
2012-11-07 jprocterJAL-1201 update pages to use new website design
2012-10-22 jprocterJalview 2.8 Source Header
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand...
2012-09-06 jproctermerge new 2.7.1 and 2.8 features into one
2012-08-20 jprocterJAL-1140 test Annotate3D methods for SAM Riboswitch...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ...
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built...
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-20 jprocter(JAL-963) jalviewLite RNA alignment example (reusing...
2011-10-14 jprocter(JAL-958) documented normalised sequence logo parameter
2011-09-28 jprocterbroken link. rearranged opening pg
2011-09-27 jprocterJAL-944 - replaced stale PFAM links for 2.7 release...
2011-09-27 jprocterapply version 2.7 copyright
2011-09-23 jprocterdebugged example file again - old version had view...
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic...
2011-09-14 jprocterJAL-931 - groovy test harness code.
2011-09-14 jproctertest data for JAL-701
2011-09-05 jprocternote about ensuring callers of loadAlignment(..) save...
2011-08-18 jproctertestdata for JAL-701 and JAL-908
2011-08-18 jprocterJAL-907 testdata for JAL-701
2011-08-18 jprocterJAL-907 - test data directory readme
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