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Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
[jalview.git] / examples /
2017-01-16 Jim ProcterJAL-2349 JAL-2382 example contact prediction in RR... tree | commitdiff
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... tree | commitdiff
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format tree | commitdiff
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-15 kiramtJAL-2316 Changes following review. tree | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... tree | commitdiff
2016-11-12 Jim ProcterJAL-2321 added test data. Now need a test. tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'patch/JAL-2234_renameFER1_ARATH' into... tree | commitdiff
2016-10-24 Jim ProcterJAL-2234 reordered seqs (after sequence data was reorde... tree | commitdiff
2016-10-24 Jim ProcterJAL-2234 rename seqs for linked jalview examples tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 renamed Jnet to Jared in help, web services... tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile... tree | commitdiff
2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test tree | commitdiff
2016-10-13 Jim ProcterJAL-2234 switch FER1_ARATH and FER2_ARATH in ferredoxin... tree | commitdiff
2016-10-12 Jim ProcterJAL-2234 switched FER1_ARATH and FER2_ARATH in example... tree | commitdiff
2016-10-10 tcofoegbuJAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 license header tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-04 Jim ProcterJAL-2005 JAL-599 test alignment and features for checki... tree | commitdiff
2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa tree | commitdiff
2016-09-25 Jim ProcterJAL-2228 groovy demo for FeatureSetCounterI tree | commitdiff
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and... tree | commitdiff
2016-09-07 Jim ProcterJAL-1670 groundhog day: fix FeaturesFileTest by redacti... bug/JAL-1803_JAL-2157 tree | commitdiff
2016-08-31 gmungocJAL-1670 repositioned feature for backwards compatibili... tree | commitdiff
2016-07-18 Jim ProcterJAL-2068 clearer instructions on how to use script... tree | commitdiff
2016-07-18 Jim ProcterJAL-2068 clarify comments tree | commitdiff
2016-06-23 tcofoegbuJAL-1996 added notes for an alternative way to view... tree | commitdiff
2016-06-22 tcofoegbuJAL-1996 added link for viewing example source codes... tree | commitdiff
2016-06-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-22 tcofoegbuJAL-1996 removed quick links in example pages, added... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 tcofoegbuJAL-1996 added JalviewApplet to download list in applet... tree | commitdiff
2016-06-20 Jim ProcterJAL-1868 fix typo in test data. tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-17 tcofoegbuJAL-1996 update applet deployment note pages tree | commitdiff
2016-05-26 gmungocJAL-1670 add non-positional feature with link to demons... tree | commitdiff
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-05 gmungocJAL-2068 better documentation in example script tree | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search tree | commitdiff
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable... tree | commitdiff
2016-04-11 tcofoegbuRestored auto-deleted file from commit: ad54c1ae5bc1b93... tree | commitdiff
2016-03-21 tcofoegbumerge tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-21 tcofoegbuJAL-1986 JAL-1996 separated out appletDeploment page... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and... tree | commitdiff
2015-10-08 gmungocMerge branch 'Release_2_9_0b1_Branch' of https://source... tree | commitdiff
2015-10-08 gmungocJAL-1684 example uncommented on 2.9.0b1 branch tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that... tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-22 gmungocJAL-1859 adding "set hoverDelay 0.001;" to Jmol startup... tree | commitdiff
2015-09-16 gmungocJAL-1684 typo correction tree | commitdiff
2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger tree | commitdiff
2015-09-10 Jim ProcterJAL-1684 ahem - omit the example title too :) tree | commitdiff
2015-09-10 Jim ProcterJAL-1684 defer split frame applet example for the 2... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files tree | commitdiff
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the... tree | commitdiff
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for... tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used... tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen... tree | commitdiff
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9 tree | commitdiff
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo... tree | commitdiff
2015-09-08 Jim ProcterJAL-1551 crlf change tree | commitdiff
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change... tree | commitdiff
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link tree | commitdiff
2015-09-08 tcofoegbumerge tree | commitdiff
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added... tree | commitdiff
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar! tree | commitdiff
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