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JAL-2491 Better merge
[jalview.git]
/
examples
/
2017-05-12
Jim Procter
JAL-2228 updated script in help docs, renamed docs...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 applet doc for showOccupancy parameter
tree
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commitdiff
2017-03-06
kiramt
JAL-2388 Corrected overview panel behaviour, updated...
tree
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commitdiff
2017-02-23
kiramt
JAL-2388 Unit tests in progress
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 flag provided for 2.10.1 PCA gap calculation...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2398 include 'compatibility mode' for C->R score...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat...
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed FeatureCounterI in favour of FeatureSe...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 groovy script that registers a new file format
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 pull up isNucleotide to SequenceCollectionI
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2017-01-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-29
gmungoc
JAL-2630 first pass groovy colour scheme (with slight...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-15
kiramt
JAL-2316 Changes following review.
tree
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commitdiff
2016-12-14
Jim Procter
Merge branch 'patch/JAL-2197_jpredforjnets' into develop
tree
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commitdiff
2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-2177_update_jmol_to_14.6...
tree
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commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'patch/JAL-2234_renameFER1_ARATH' into...
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2234 reordered seqs (after sequence data was reorde...
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2234 rename seqs for linked jalview examples
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2197 renamed Jnet to Jared in help, web services...
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2197 add jpredfile as alternative form of jnetfile...
tree
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commitdiff
2016-10-19
Jim Procter
JAL-2269 JAL-2195 review and revised test
tree
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commitdiff
2016-10-13
Jim Procter
JAL-2234 switch FER1_ARATH and FER2_ARATH in ferredoxin...
tree
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commitdiff
2016-10-12
Jim Procter
JAL-2234 switched FER1_ARATH and FER2_ARATH in example...
tree
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 unit test for bug
bug/JAL-2262_dnd-for-local-structure-files
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 license header
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-04
Jim Procter
JAL-2005 JAL-599 test alignment and features for checki...
tree
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commitdiff
2016-09-30
gmungoc
JAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa
tree
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commitdiff
2016-09-25
Jim Procter
JAL-2228 groovy demo for FeatureSetCounterI
tree
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commitdiff
2016-09-22
Jim Procter
JAL-2189 JAL-1812 JAL-2068 new groovy doc section and...
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1670 groundhog day: fix FeaturesFileTest by redacti...
bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-08-31
gmungoc
JAL-1670 repositioned feature for backwards compatibili...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2068 clearer instructions on how to use script...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2068 clarify comments
tree
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commitdiff
2016-06-23
tcofoegbu
JAL-1996 added notes for an alternative way to view...
tree
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commitdiff
2016-06-22
tcofoegbu
JAL-1996 added link for viewing example source codes...
tree
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commitdiff
2016-06-22
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-22
tcofoegbu
JAL-1996 removed quick links in example pages, added...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-20
tcofoegbu
JAL-1996 added JalviewApplet to download list in applet...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1868 fix typo in test data.
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-17
tcofoegbu
JAL-1996 update applet deployment note pages
tree
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commitdiff
2016-05-26
gmungoc
JAL-1670 add non-positional feature with link to demons...
tree
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commitdiff
2016-05-26
gmungoc
JAL-2079 update examples to new pfam.xfam.org domain
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-05
gmungoc
JAL-2068 better documentation in example script
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-25
tcofoegbu
develop merge
tree
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commitdiff
2016-04-25
tcofoegbu
JAL-2071 added unit tests for FTSRestClient
features/JAL-1563_uniprot-free-text-search
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 framework and example scripts for pluggable...
tree
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commitdiff
2016-04-11
tcofoegbu
Restored auto-deleted file from commit: ad54c1ae5bc1b93...
tree
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commitdiff
2016-03-21
tcofoegbu
merge
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-02-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-01-26
tcofoegbu
develop merge
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1986 JAL-1996 separated out appletDeploment page...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 GFF new/refactored helper classes
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1684 updated fragment alignment for example and...
tree
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commitdiff
2015-10-08
gmungoc
Merge branch 'Release_2_9_0b1_Branch' of https://source...
tree
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commitdiff
2015-10-08
gmungoc
JAL-1684 example uncommented on 2.9.0b1 branch
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-10-05
gmungoc
JAL-1684 JAL-1452 new applet parameters defaultColourNuc
tree
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commitdiff
2015-10-05
Jim Procter
JAL-1684 trimmed proteins to just those sequences that...
tree
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commitdiff
2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
tree
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-09-22
gmungoc
JAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1684 typo correction
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 working variable to aid inspection in debugger
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1684 ahem - omit the example title too :)
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1684 defer split frame applet example for the 2...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for groovy files
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1684 updated example to just a fragment of the...
tree
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commitdiff
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