Merge branch 'patch/JAL-547_pid_groovyscript' into develop
[jalview.git] / examples /
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and...
2015-10-08 gmungocMerge branch 'Release_2_9_0b1_Branch' of https://source...
2015-10-08 gmungocJAL-1684 example uncommented on 2.9.0b1 branch
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that...
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 gmungocJAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
2015-09-16 gmungocJAL-1684 typo correction
2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger
2015-09-10 Jim ProcterJAL-1684 ahem - omit the example title too :)
2015-09-10 Jim ProcterJAL-1684 defer split frame applet example for the 2...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the...
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for...
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used...
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen...
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo...
2015-09-08 Jim ProcterJAL-1551 crlf change
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change...
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added...
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar!
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols...
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget
2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol...
2015-09-03 tcofoegbuJAL-1859 JAL-857 house keeping
2015-09-03 tcofoegbuJAL-1859 JAL-857 updated all reference of JmolApplet...
2015-09-03 tcofoegbuanother merge from develop
2015-09-03 tcofoegbuupdated examples index page
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html...
2015-09-03 tcofoegbuJAL-857 increased callback timeout to accomodated apple...
2015-09-03 tcofoegbumerge from develop
2015-08-10 Jim ProcterMerge branch 'release/2_9_documentation' into develop
2015-08-04 tcofoegbuJAL-1816 fixed bug in identify file preventing it from...
2015-08-04 tcofoegbuJAL-1788 updated biojson docs
2015-07-28 tcofoegbuJAL-857 converted jalview applet launch scripts to...
2015-07-28 tcofoegbuJAL-857 merge from develop
2015-07-24 tcofoegbuJAL-857 javascipt housekeeping
2015-07-24 tcofoegbuJAL-857 modified javascipt to read browser url on page...
2015-07-24 tcofoegbuJAL-857 disabled javascript page state storage in cookies
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group...
2015-07-23 tcofoegbuJAL-1819 Test cases for Identify file
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-08 tcofoegbuJAL-1641 biojson documentation with docson
2015-07-06 tcofoegbuJAL-1641 added json schema for jalview JSON model,...
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring
2015-06-30 Jim ProcterJAL-1682 JAL-1645 remove references to 2.8.3
2015-06-25 tcofoegbuJAL-857 updated examples directory web pages to be...
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment...
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with...
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate...
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein...
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-04-13 gmungocJAL-1695 enableSplitFrame=true for applet example
2015-04-08 gmungocJAL-1684 adjusting parameters for split frame applet...
2015-04-08 gmungocJAL-1690 scaleProteinAsCdna new applet parameter documented
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-26 gmungocJAL-1665 getSequenceFeatures; Desktop.getAlignFrames...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff...
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-14 Charles OfoegbuHouse keeping
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping...
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe...
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while...
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected...
2014-09-12 gmungocJAL-1516 handle null annotations
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview...
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-28 Jim ProcterJAL-1509 use local deployJava
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