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JAL-2728 use right denominator for min/max ratio calculations
[jalview.git]
/
src
/
MCview
/
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-09
gmungoc
JAL-2505 use constructors to set (what will be) final...
tree
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commitdiff
2017-05-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-03-15
gmungoc
JAL-2443 push getResidueBoxColour inside getResidueColour
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-02-13
gmungoc
JAL-1632 JAL-2416 load score matrices from file, as...
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2016-12-23
gmungoc
JAL-2120 JAL-2360 remove obsolete PDBViewer
tree
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commitdiff
2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
tree
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commitdiff
2016-12-12
gmungoc
JAL-1544 backgroud -> background
tree
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commitdiff
2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
tree
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commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
tree
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commitdiff
2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
tree
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 squashed bug that breaks feature mapping for...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-08-31
gmungoc
JAL-2077 test isPopupTrigger in mouseReleased or mouseC...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-05
gmungoc
JAL-2164 add transferred annotation to sequence
tree
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commitdiff
2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
tree
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-07-01
tcofoegbu
JAL-2135 bugfix for error preventing processing of...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
tree
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commitdiff
2016-04-24
Jim Procter
JAL-2077 - reinstate popups on osx
tree
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commitdiff
2016-04-13
tcofoegbu
JAL-1270 more fix for failing Functional test
tree
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commitdiff
2016-03-30
tcofoegbu
JAL-1668 further clean-up of popup menu and NPE check...
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-1478 Fixed ArrayIndexOutOfBoundsException while...
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-1818 reimplemented sequence and annotation processi...
tree
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commitdiff
2016-03-03
tcofoegbu
JAL-1919 PDBfile and JmolParser refactor
tree
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commitdiff
2016-02-26
tcofoegbu
JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
tree
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
tree
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commitdiff
2016-02-23
tcofoegbu
develop merge
tree
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commitdiff
2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
tree
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commitdiff
2016-02-09
tcofoegbu
merge develop
tree
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commitdiff
2016-02-09
tcofoegbu
JAL-1975 updated image export pipeline to produce more...
tree
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commitdiff
2016-01-26
tcofoegbu
develop merge
tree
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commitdiff
2016-01-25
tcofoegbu
JAL-1998 bugfix for division by zero error for PDB...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
tree
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commitdiff
2015-10-29
tcofoegbu
JAL-1926 JAL-1479 updated PDBfile fetcher to add source...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-06
Jim Procter
JAL-1645 JAL-1355 UI/i18n: added missing messages,...
tree
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commitdiff
2015-09-03
gmungoc
JAL-1828 lookup table to convert MSE to MET when parsin...
tree
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commitdiff
2015-08-24
gmungoc
JAL-1759 removed trim() of Atom.resNumIns as not backwa...
tree
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commitdiff
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
tree
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commitdiff
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
tree
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commitdiff
2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
tree
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commitdiff
2015-06-08
gmungoc
JAl-1421 fix method reflection argument (properly this...
tree
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commitdiff
2015-06-08
gmungoc
JAL-1421 undid premature 'improvement' of method parame...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1752 structure highlight scoped to only its mapped...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 patch to fix bug with showing reference annotat...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 formatting
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 employ the provided DNA/Protein matrix string...
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 disable addition of PDBRESNUM annotation line
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 nicer temperature factor labelling and include...
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 switch from .transfer to .liftOver for transfer...
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
tree
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commitdiff
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