Merge branch 'develop' into trialMerge
[jalview.git] / src / jalview / api /
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than...
2016-10-30 Jim ProcterJAL-1738 JAL-345 new controller method based on mark...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 Jim ProcterJAL-2106 DBRefEntry.isPrimary() minimal test & implemen...
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not...
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
2016-07-11 gmungocfile format enum wip changes
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme...
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their...
2016-05-31 tcofoegbumerge
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version...
2016-05-26 Jim ProcterJAL-2121 refactor todo
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove...
2016-04-26 gmungocJAL-2068 deleting user-defined annotation removes the...
2016-04-22 gmungocJAL-2068 Javadoc added
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-03-21 tcofoegbudevelop merge
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous...
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed...
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-20 gmungocMerge branch 'JAL-1956_featureStyles' into features...
2016-02-20 gmungocJAL-2016 first draft of pre-set feature colour scheme
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a...
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi...
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html...
2015-08-11 tcofoegbuadd ability to launch jalview from exported html +...
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring
2015-06-26 tcofoegbuJAL-1780 improvement to ensure export settings dialog...
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior...
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output
2015-06-15 tcofoegbuJAL-1641 clean up
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
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