JAL-2403 redundant 'implements' removed
[jalview.git] / src / jalview / appletgui / AlignFrame.java
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV"
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile...
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-03-25 Jim ProcterJAL-2034 make Escape/select/deselect operations not...
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns...
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 tcofoegbuJAL-1774 house keeping
2015-09-21 tcofoegbumerge
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather...
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence...
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl...
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens...
2015-08-24 gmungocremove mentions of non-functional RNAInteraction colour...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 gmungocJAL-1799 equivalent logic in applet
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
2015-02-27 Jim Procterfix for JAL-1678
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Jim ProcterJAL-1551 source code formatting
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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