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[jalview.git] / src / jalview / appletgui / SeqPanel.java

2019-10-08	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-06-06	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecat...	blob \| commitdiff \| diff to current
2019-02-19	gmungoc	JAL-3187 hacks to get peptide variant in to Jmol hover...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	removing indirect references to Platform.isAMac()	blob \| commitdiff \| diff to current
2018-01-19	kiramt	JAL-2759 Changes to getVisibleSequenceStrings after...	blob \| commitdiff \| diff to current
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenC...	blob \| commitdiff \| diff to current
2017-11-22	gmungoc	JAL-2069 spike updated with latest (FeatureTypeSettings)	blob \| commitdiff \| diff to current
2017-11-15	kiramt	JAL-2831 ported to applet	blob \| commitdiff \| diff to current
2017-11-02	gmungoc	JAL-2808 spike updated with latest	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-2526 updated javadoc	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-05	Jim Procter	Merge branch 'master' into portforward/JAL-2675_2102b1t...	blob \| commitdiff \| diff to current
2017-09-04	kiramt	JAL-2673 turn off update to running flag from scrollUp... bug/JAL-2673	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-28	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-07-28	gmungoc	JAL-147 corrected status bar message for wrapped scroll...	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-19	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-2605 exclude left/right scale in sequence column...	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-1858 repaint after Amend Features dialog	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-06	kiramt	JAL-2591 Removed getHiddenRegions()==null checks which...	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	JAL-2547 handle contact features 'around' a gap correctly	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	JAL-2547 tooltip/AmendFeatures on gap straddled by...	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2034contextchange' into develop	blob \| commitdiff \| diff to current
2017-05-29	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2491' into develop	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2547tooltipOnGap' into develop	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	JAL-2526 test and documentation for SeqPanel.setStatus...	blob \| commitdiff \| diff to current
2017-05-25	kiramt	JAl-2034 Ported to applet bug/JAL-2034contextchange	blob \| commitdiff \| diff to current
2017-05-23	gmungoc	JAL-2547 don't show features in tooltip over a gap bug/JAL-2547tooltipOnGap	blob \| commitdiff \| diff to current
2017-05-22	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-17	gmungoc	JAL-2504 use (and update) defaults for new feature...	blob \| commitdiff \| diff to current
2017-05-16	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-16	kiramt	JAL-2522 Missed fix to applet	blob \| commitdiff \| diff to current
2017-05-15	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-12	gmungoc	JAL-2490 performant findFeaturesAtRes	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-11	kiramt	JAL-2491 First port to applet	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-04	gmungoc	JAL-2504 allow feature type to be specified for Create...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	Merge remote-tracking branch 'origin/features/JAL-2388h...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	JAL-2388 last separation of hidden columns/col selection	blob \| commitdiff \| diff to current
2017-04-25	kiramt	JAL-2388 Working hidden regions hide/show in desktop	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Finished split of hidden columns and selected...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2435 copy font changes across split screen	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-15	Jim Procter	fix for JAL-2419 - don’t trash the current selection	blob \| commitdiff \| diff to current
2017-02-15	Jim Procter	JAL-2374 don’t search twice for containing group to...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2385 more tests/bug fixes mostly for gui.SliderPane...	blob \| commitdiff \| diff to current
2017-01-20	gmungoc	Merge branch 'features/JAL-2360colourSchemeApplicabilit...	blob \| commitdiff \| diff to current
2017-01-20	gmungoc	JAL-2385 tweak to applet 'switch colour slider context'	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	Merge branch 'features/JAL-2360colourSchemeApplicabilit...	blob \| commitdiff \| diff to current
2017-01-05	gmungoc	JAL-2374 fix popup out by one and multiple groups bugs	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-31	Jim Procter	JAL-2034 moved ‘isDefinedGroup’ flag to a test method...	blob \| commitdiff \| diff to current
2016-07-19	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-05-31	gmungoc	JAL-1011 JAL-1989 don't mirror column-only selections...	blob \| commitdiff \| diff to current
2016-05-30	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-05-27	gmungoc	JAL-1989 tightened up use of flag for 'column selection...	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 disable overview updates when extent of a...	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 flag for triggering redraw of overview window...	blob \| commitdiff \| diff to current
2016-01-11	gmungoc	JAL-1989 more unit tests and encapsulation for ColumnSe...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-07	gmungoc	JAL-1636 translate stop codon as '', mouseover as...	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1840 correct setting status bar for structure mouseover	blob \| commitdiff \| diff to current
2015-08-25	gmungoc	JAL-1674 more correct status bars in splitframe mouseov...	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
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