JAL-2388 Initial removal of hidden cols/seqs out of overview
[jalview.git] / src / jalview / appletgui /
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys
2016-08-24 gmungocJAL-2151 port fix to applet
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-17 gmungocJAL-2146 status message now with formatted residue...
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns
2016-08-16 gmungocJAL-2171 matching bracket default character for rna...
2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present)
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos...
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-07-18 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is...
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches...
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column...
2016-07-18 gmungocJAL-2015 restore check for null colour in paint()
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-06-20 Jim ProcterJAL-2065 port patch to applet
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections...
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to...
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD...
2016-05-30 Jim ProcterJAL-1551 formatting
2016-05-30 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection...
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
2016-05-04 gmungocJAL-2092 hide columns with/without feature
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove...
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method...
2016-04-12 gmungocJAL-1723 tooltip dbrefs sorted and limited to two per...
2016-04-11 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo...
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-03-25 Jim ProcterJAL-2034 break out of redraw loop early if another...
2016-03-25 Jim ProcterJAL-2034 disable overview updates when extent of a...
2016-03-25 Jim ProcterJAL-2034 make Escape/select/deselect operations not...
2016-03-25 Jim ProcterJAL-2034 flag for triggering redraw of overview window...
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns...
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a...
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on...
2015-11-21 gmungocJAL-1968 remove feature links
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-11-11 tcofoegbumerge
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent...
2015-09-28 tcofoegbumerge
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc...
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 tcofoegbuJAL-1774 house keeping
2015-09-21 tcofoegbumerge
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather...
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence...
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl...
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour...
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens...
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