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Merge branch 'JAL-1397' into JAL-1372_referenceseq
[jalview.git]
/
src
/
jalview
/
appletgui
/
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1495 - initialise menu entry from current...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1494 tweaked logic to fix NPEs and modify...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-969 remove unnecessary overrides
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 mark redundant sequences as soon as redundancy...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 simpler and more efficient interactive highlig...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 ensure slider value wide enough to see three...
tree
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commitdiff
2014-04-24
Jim Procter
JAL-1232 fix - ensure display all columns flag is set...
tree
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commitdiff
2014-04-05
Jim Procter
Merge branch 'r281_JAL-1211' into Release_2_8_1_Branch
tree
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commitdiff
2014-04-04
Jim Procter
JAL-1211 - set annotation panel height according to...
tree
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commitdiff
2014-04-04
Jim Procter
JAL-1211 - pick up site-defined defined window geometry...
tree
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commitdiff
2014-04-04
Jim Procter
JAL-1335 typo and 'edit' action
tree
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commitdiff
2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 natasha's name on applet author list
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into JAL-1422_srs_r281
tree
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commitdiff
2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into Release_2_8_Branch
tree
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commitdiff
2014-01-13
Jim Procter
JAL-1422 update any existing configuration to replace...
tree
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commitdiff
2014-01-13
Jim Procter
JAL-1422 change default link to EMBL-EBI Search
tree
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commitdiff
2013-12-25
darolmar
JAL-1355 (basic i18n support)
tree
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commitdiff
2013-10-17
Jim Procter
fix for JAL-1398 - original colourscheme is enabled...
tree
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commitdiff
2013-10-17
Jim Procter
JAL-1233 TODO concerning the way we propagate annotatio...
tree
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commitdiff
2013-10-17
Jim Procter
JAL-1397 getters for originalColours flag
tree
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commitdiff
2013-10-08
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
tree
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commitdiff
2013-10-08
Jim Procter
JAL-1384 Create Group in selection popup menu
tree
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commitdiff
2013-10-08
Jim Procter
fix for JAL-1387
tree
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commitdiff
2013-10-08
Jim Procter
JAL-1384 documentation and consistent ordering for...
tree
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commitdiff
2013-10-08
Jim Procter
JAL-1384 group/ungroup sequences with command/ctrl...
tree
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commitdiff
2013-10-07
Jim Procter
JAL-1385 refactor logic to AlignmentViewController
tree
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commitdiff
2013-10-07
Jim Procter
JAL-1385 JAL-535 refactor sequence colour settings...
tree
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commitdiff
2013-08-30
Jim Procter
JAL-1367 entry in sequence ID popup menu to set/unset...
tree
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commitdiff
2013-08-30
Jim Procter
JAL-1370 allow show unconserved to reflect differences...
tree
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commitdiff
2013-08-30
Jim Procter
JAL-1370 allow show unconserved to reflect differences...
tree
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commitdiff
2013-08-30
Jim Procter
JAL-1367 allow reference sequence to be shown in bold...
tree
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commitdiff
2013-08-29
darolmar
i18n
tree
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commitdiff
2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
tree
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commitdiff
2013-06-23
Jim Procter
JAL-1230 update alignment state for annotation edits...
tree
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commitdiff
2013-06-07
Jim Procter
fix for JAL-1246
tree
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commitdiff
2013-06-07
Jim Procter
JAL-1307 patch to squash number format exceptions when...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 conditional parameters for controlling clipping
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 changed signature to allow clipping bounds...
tree
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commitdiff
2013-01-18
jprocter
JAL-1255 don't show 'Right click to add annotations...
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-11-07
jprocter
JAL-957 manual update to applet authorlist - need to...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-09-25
jprocter
JAL-1031 allow empty selections to pass through to...
tree
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commitdiff
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 normalise logo menu options in applet
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
tree
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commitdiff
2012-09-19
jprocter
JAL-1170 column and row positions confused in implement...
tree
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
tree
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 equivalent menu items for applet - not visible...
tree
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
tree
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commitdiff
2012-07-01
jprocter
ensure all annotation dependent rendering gets refreshed
tree
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commitdiff
2012-06-15
jprocter
fix JAL-1122
tree
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commitdiff
2012-06-15
jprocter
JAL-535 - refactored core PCA viewer code to viewmodel
tree
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commitdiff
2012-06-15
jprocter
JAL-535 refactored core code from PCA viewer to viewmodel.
tree
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commitdiff
2012-06-15
jprocter
Merge branch 'JAL-1013_pca_rna_dna' into develop
tree
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commitdiff
2012-06-13
jprocter
javatidy
tree
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
tree
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
tree
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commitdiff
2012-06-07
jprocter
javatidy
tree
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commitdiff
2012-06-07
jprocter
JAL-967, JAL-1114, JAL-1115 - modified render and calcu...
tree
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commitdiff
2012-05-31
jprocter
formatting
tree
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commitdiff
2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
tree
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commitdiff
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
tree
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commitdiff
2012-05-24
jprocter
patch for occasional NPE when applet is quit
tree
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commitdiff
2012-05-23
jprocter
JAL-1078 - extend applet cut'n'paste features/annotatio...
tree
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commitdiff
2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
tree
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commitdiff
2012-05-23
jprocter
JAL-1102 todos and status updates when data is added
tree
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commitdiff
2012-05-23
jprocter
todo JAL-1104 : functions to refactor
tree
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commitdiff
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
tree
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commitdiff
2012-05-16
jprocter
warning dialog - fixes JAL-1099
tree
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commitdiff
2011-12-08
jprocter
(JAL-1013) specify sequence type to ensure PCA calculat...
tree
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commitdiff
2011-12-08
jprocter
reorder fields to match application
tree
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commitdiff
2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into develop
tree
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commitdiff
2011-11-04
jprocter
(JAL-980,JAL-982) - applet console only allows console...
tree
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commitdiff
2011-11-04
jprocter
(JAL-980) update binding for refactored Jmol constants...
tree
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commitdiff
2011-10-28
jprocter
(JAL-885) RNA helix and purine pyrimidine colouring...
tree
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commitdiff
2011-10-28
jprocter
JAL-969 - refactor initialisation of automatic annotati...
tree
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commitdiff
2011-10-28
jprocter
JAL-902 structure conservation row for applet
tree
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commitdiff
2011-10-28
jprocter
(JAL-970) interactive editing of RNA helix annotation...
tree
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commitdiff
2011-10-28
jprocter
(JAL-889) ensure annotation row is revalidated after...
tree
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commitdiff
2011-10-27
jprocter
(JAL-969) efficiency
tree
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commitdiff
2011-10-27
jprocter
(JAL-969) removed TODOs
tree
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commitdiff
2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
tree
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commitdiff
2011-10-27
jprocter
(JAL-967) ensure annotation panel is rendered with...
tree
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commitdiff
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
tree
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commitdiff
2011-10-21
jprocter
extend alignPanel api with OOMHandler call to raise...
tree
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commitdiff
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
tree
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commitdiff
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
tree
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commitdiff
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