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JAL-2344 correct roundtrip test to exclude Jalview project format
[jalview.git] / src / jalview / appletgui /
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... tree | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... tree | commitdiff
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys tree | commitdiff
2016-08-24 gmungocJAL-2151 port fix to applet tree | commitdiff
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-17 gmungocJAL-2146 status message now with formatted residue... tree | commitdiff
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns tree | commitdiff
2016-08-16 gmungocJAL-2171 matching bracket default character for rna... tree | commitdiff
2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present) tree | commitdiff
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item tree | commitdiff
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos... tree | commitdiff
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is... tree | commitdiff
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches... tree | commitdiff
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column... tree | commitdiff
2016-07-18 gmungocJAL-2015 restore check for null colour in paint() tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-12 gmungocFileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 port patch to applet tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop tree | commitdiff
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... tree | commitdiff
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-30 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-30 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-04 gmungocJAL-2092 hide columns with/without feature tree | commitdiff
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-11 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display tree | commitdiff
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API tree | commitdiff
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... tree | commitdiff
2016-03-25 Jim ProcterJAL-2034 break out of redraw loop early if another... tree | commitdiff
2016-03-25 Jim ProcterJAL-2034 disable overview updates when extent of a... tree | commitdiff
2016-03-25 Jim ProcterJAL-2034 make Escape/select/deselect operations not... tree | commitdiff
2016-03-25 Jim ProcterJAL-2034 flag for triggering redraw of overview window... tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on... tree | commitdiff
2015-11-21 gmungocJAL-1968 remove feature links tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... tree | commitdiff
2015-09-28 tcofoegbumerge tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... tree | commitdiff
2015-09-22 tcofoegbuJAL-1774 house keeping tree | commitdiff
2015-09-21 tcofoegbumerge tree | commitdiff
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather... tree | commitdiff
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence... tree | commitdiff
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl... tree | commitdiff
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-14 gmungocJAL-1684 align added alignment to match original in... tree | commitdiff
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference... tree | commitdiff
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu... tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... tree | commitdiff
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... tree | commitdiff
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... tree | commitdiff
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... tree | commitdiff
2015-08-26 gmungocJAL-1840 correct setting status bar for structure mouseover tree | commitdiff
2015-08-26 gmungocJAL-1759 added check for null (console 'history') tree | commitdiff
2015-08-26 gmungocFix to use correct resource bundle entry tree | commitdiff
2015-08-25 gmungocJAL-1674 more correct status bars in splitframe mouseov... tree | commitdiff
2015-08-24 gmungocremove mentions of non-functional RNAInteraction colour... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
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