Merge branch 'bug/JAL-1923_290b2_group_annots' into develop
[jalview.git] / src / jalview / appletgui /
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent...
2015-09-28 tcofoegbumerge
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc...
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after...
2015-09-22 tcofoegbuJAL-1774 house keeping
2015-09-21 tcofoegbumerge
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather...
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence...
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl...
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour...
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens...
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
2015-08-26 gmungocJAL-1840 correct setting status bar for structure mouseover
2015-08-26 gmungocJAL-1759 added check for null (console 'history')
2015-08-26 gmungocFix to use correct resource bundle entry
2015-08-25 gmungocJAL-1674 more correct status bars in splitframe mouseov...
2015-08-24 gmungocremove mentions of non-functional RNAInteraction colour...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing...
2015-07-06 gmungocJAL-1799 equivalent logic in applet
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow...
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-18 gmungocJAL-1663 detect tab out of RGB value; correct field...
2015-05-18 gmungocJAL-1663 apply new colour correctly; source formatting
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to...
2015-05-01 gmungocJAL-1690 unused fields removed
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-13 gmungocJAL-1690 show 'scale protein' in protein _and_ dna...
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
2015-02-27 Jim Procterfix for JAL-1678
2015-02-02 Charles OfoegbuMerge commit
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
2015-01-23 Jim ProcterJAL-1551 crlf changes
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1551 formatting/imports
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv...
2015-01-23 Jim ProcterJAL-1551 source code formatting
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-18 Jim ProcterJAL-1628 formatting
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 Jim ProcterJAL-1483 source formatting
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig...
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