JAL-1760 JAL-1641 Serialisation of Hidden Seqs and Cols in JSON output. Added ability...
[jalview.git] / src / jalview / appletgui /
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into develop
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace...
2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-17 Jim ProcterMerge branch 'JAL-1397' into develop
2013-10-17 Jim Procterfix for JAL-1398 - original colourscheme is enabled...
2013-10-17 Jim ProcterJAL-1233 TODO concerning the way we propagate annotatio...
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu
2013-10-08 Jim Procterfix for JAL-1387
2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for...
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2013-08-30 Jim ProcterJAL-1367 entry in sequence ID popup menu to set/unset...
2013-08-30 Jim ProcterJAL-1370 allow show unconserved to reflect differences...
2013-08-30 Jim ProcterJAL-1370 allow show unconserved to reflect differences...
2013-08-30 Jim ProcterJAL-1367 allow reference sequence to be shown in bold...
2013-08-29 darolmari18n
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop
2013-06-23 Jim ProcterJAL-1230 update alignment state for annotation edits...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop
2013-06-07 Jim Procterfix for JAL-1246
2013-06-07 Jim ProcterJAL-1307 patch to squash number format exceptions when...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-05-24 Jim ProcterJAL-1161 conditional parameters for controlling clipping
2013-05-24 Jim ProcterJAL-1161 changed signature to allow clipping bounds...
2013-02-13 Jim ProcterMerge branch 'jims_annotate3d_update' into menard_final...
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop
2013-01-18 jprocterJAL-1255 don't show 'Right click to add annotations...
2012-12-07 jproctertidy import
2012-12-07 jprocterremove mentions of non-functional RNAInteraction colour...
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to...
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty...
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand...
2012-09-24 jprocterJAL-958 normalise logo menu options in applet
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
2012-09-24 jprocteronly recalc group conservation after last sequence...
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated...
2012-09-19 jprocterJAL-1170 column and row positions confused in implement...
2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation...
2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible...
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph...
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
2012-06-15 jprocterfix JAL-1122
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel.
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-06-07 jprocterjavatidy
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calcu...
2012-05-31 jprocterformatting
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-24 jprocterpatch for occasional NPE when applet is quit
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio...
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
2012-05-23 jprocterJAL-1102 todos and status updates when data is added
2012-05-23 jproctertodo JAL-1104 : functions to refactor
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2012-05-16 jprocterwarning dialog - fixes JAL-1099
2011-12-08 jprocter(JAL-1013) specify sequence type to ensure PCA calculat...
2011-12-08 jprocterreorder fields to match application
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console...
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants...
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-28 jprocterJAL-902 structure conservation row for applet
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation...
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