Merge branch 'spotless_2' into JAL-1551_2_11_3_spotlett
[jalview.git] / src / jalview / bin / Jalview.java
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_...
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick
2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats
2020-06-16 Ben SoaresJAL-3608 formatting save only
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying...
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option...
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux...
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version...
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta...
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque...
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad...
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from...
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-05 hansonrfixes for Jalview command-line URI code
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate...
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of...
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy
2019-03-27 hansonrisJS cleanup
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-06 gmungocJAL-3035 more das bits removed
2019-03-06 Jim ProcterJAL-3208 re-enable the setprop CLI arg, but only in...
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main...
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators;
2019-01-11 hansonr(commented out but potentially useful) methods to tap...
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-09-18 Jim ProcterJAL-3035 more dedasification
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for...
2018-07-17 bsoaresJAL-3065
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor
2018-06-27 hansonrJAL-3032 just the changes pulled already
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative...
2018-06-20 hansonrupdate of javajs package; adds org.apache.harmony,...
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented...
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to...
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-08 gmungocJAL-2168 document '-nonews' parameter
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied
2016-07-11 gmungocfile format enum wip changes
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop...
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
2016-04-25 Jim ProcterJAL-2074 disable security manager at start up re: lopic...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle...
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