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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
bin
/ Jalview.java
2012-11-08
jprocter
tidy imports
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-04
jprocter
JAL-1188 - set the user agent to Jalview Desktop/$...
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2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
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2012-10-01
jprocter
JAL-1183 use dialog queue for usage statistics prompt
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2012-08-24
jprocter
Merge branch 'develop' into menard
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2012-08-24
jprocter
JAL-1087 skip processing any of the other command line...
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2012-08-14
Anne Menard
last version stay many bugs ..
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
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2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
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2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
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2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
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2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
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2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
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2011-01-07
jprocter
refactored dropFile allowing known information to be...
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2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
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2010-11-14
jprocter
refactored protocol check to jalview.io.FileParse
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commitdiff
2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-08-31
jprocter
notes re JAL-629
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2010-08-06
jprocter
interactive/batch mode test for groovy scripting (See...
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2010-06-12
jprocter
documented the -colour command line argument.
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2010-06-09
jprocter
OSX look and feel JAL-577
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2010-05-14
jprocter
standard function for bootstrapping discovery threads
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-02-10
jprocter
das feature fetch followed by png output fixed (bug...
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2009-11-09
jprocter
more spin on GA prompt
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2009-11-09
jprocter
user friendly GA and privacy statement
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2009-10-13
jprocter
prompt user to enable usage stats
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2009-07-24
jprocter
explicitly grab all permissions for application executi...
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2009-06-12
jprocter
retrieve and init vamsas session from vdoc at URL
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2009-06-08
jprocter
clargs documentation, new vamsas session import and...
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2009-06-01
jprocter
first experiment with GA application use tracking
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2009-03-17
jprocter
sortbytree/nosortbytree and defprop arguments. (defprop...
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2008-12-04
jprocter
added local das sequence source CLI and documentation
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2008-12-04
jprocter
allow sequence source to be specified as sequence:mydas...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-06-30
jprocter
safer retrieval of groovy scripts from URLs
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2008-01-29
jprocter
groovy scripts can be read from stdin
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2008-01-11
jprocter
added groovy argument for launching a groovy script...
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2007-11-12
jprocter
javadoc and introduction of dasserver and fetchdas...
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2007-08-01
jprocter
added the '-tree' parameter to open a tree from the...
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2007-07-30
jprocter
test cc change revoked.
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2007-07-30
jprocter
test cc
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2007-05-04
amwaterhouse
New example file for version 2.3
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2007-05-04
amwaterhouse
New example file for version 2.3
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2007-02-07
amwaterhouse
Formatting
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2007-02-06
jprocter
hardwired default user questionnaire url and by default...
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2007-02-05
jprocter
command line hook for questionnaire url argument.
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2007-02-02
amwaterhouse
LookandFeel must be set in headless state as window...
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2006-11-06
amwaterhouse
Remember fileName in alignFrame
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2006-09-11
amwaterhouse
Error message if file not found moved for headless...
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2006-08-21
amwaterhouse
header updated
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2006-08-10
amwaterhouse
file: is a URL
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2006-07-07
amwaterhouse
Colour argument added, to mirror applet view
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2006-06-09
amwaterhouse
parseFeaturesFile
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2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
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2006-04-04
amwaterhouse
Add annoations from the command line
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2006-04-04
amwaterhouse
Jalview2XML does not use static load
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2006-03-08
amwaterhouse
IdentifyFile should not be static
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2006-01-12
jprocter
ensured properties are loaded before loggers are initia...
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2005-12-06
amwaterhouse
after merge
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2005-10-07
amwaterhouse
Don't exit if file not found and not headless
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2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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2005-09-15
amwaterhouse
Logger moved to prefs so that class not found error...
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2005-08-17
jprocter
<No Comment Entered>
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2005-08-17
amwaterhouse
Use getDefault for exampleFile
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2005-08-15
amwaterhouse
Output java version, os version on startup
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2005-08-09
amwaterhouse
Properties file is used in preference to viewport/cache...
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2005-08-03
amwaterhouse
Can run headless=true
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2005-07-07
amwaterhouse
Runs if no files to open and -nodisplay is not used
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-10
jprocter
added castor logger configuration.
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-06-02
amwaterhouse
Check startup file is not null
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2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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2005-05-20
amwaterhouse
look for startup file
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2005-04-29
amwaterhouse
read in preferences at start up
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2005-04-25
amwaterhouse
if applet, load properties in void init
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2005-04-21
amwaterhouse
Allow for -open arg
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2005-04-07
amwaterhouse
remove setdecorated line
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2005-03-31
jprocter
added a an axis log4j appender property to the jalview...
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2005-03-30
jprocter
fixed the log4j messages.
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2005-03-21
amwaterhouse
use system l&f
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2005-03-15
amwaterhouse
stick with cross platform look and feel!!!
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2005-03-15
amwaterhouse
try system look and feel for a change
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2005-02-07
amwaterhouse
load properties on startup
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2005-01-25
amwaterhouse
system.exit or destroy if applet or app
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2005-01-25
amwaterhouse
extends Applet
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2004-12-10
amwaterhouse
Use cross platform lookandfeel
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2004-11-16
amwaterhouse
don't use setdefaultlookandfeeldecorated, its buggy
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2004-11-02
amwaterhouse
Jalview Imported Sources
start
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