JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time...
[jalview.git] / src / jalview / bin /
2022-03-18 Ben SoaresJAL-3978 Using getdowninstanceappdir and getdowninstanc...
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with...
2022-03-08 Jim ProcterJAL-3746 apply copyright to source
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property
2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu...
2022-02-17 Jim ProcterJAL-3959 add key retrieval urls that support CORS neede...
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 read ~/.jalview_properties before initialising...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no...
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat...
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat...
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to...
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to...
2021-12-14 Ben SoaresJAL-3933 updated log4j and slf4j jars with log4j1.2...
2021-12-14 Ben SoaresJAL-3933 Updated log4j jars with log4j-2.16.0 and compa...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more...
2021-04-19 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor...
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor...
2021-03-25 Ben SoaresJAL-3633 refactored/simplified LaunchUtils code
2021-03-20 Ben SoaresJAL-3503 Changed decimal display of memory in Prefences
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui...
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences...
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
2021-02-05 Jim ProcterJAL-3814 NONEWS property
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis...
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file...
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code...
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and...
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J...
2020-12-08 Ben SoaresJAL-3594 Change main window title
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews...
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get...
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin...
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line...
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using...
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check...
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn...
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with...
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used.
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust...
2020-11-06 Ben SoaresJAL-3609 removed debugging prints
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat...
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat...
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7
2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check...
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument...
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file...
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
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