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Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into...
[jalview.git]
/
src
/
jalview
/
bin
/
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
tree
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commitdiff
2014-11-03
gmungoc
Merge branch 'features/JAL-1152annotationSorting' of...
tree
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commitdiff
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1519 - tidy build properties management code
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-28
Jim Procter
JAL-1507 bugfix
tree
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commitdiff
2014-05-27
Jim Procter
JAL-1507 added loop to throw dummy javascript calls...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-02-21
Jim Procter
Merge branch 'pathc_JAL-1354' into develop
tree
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commitdiff
2014-02-21
Jim Procter
JAL-1448 reinstate non-locale sensitive code for readin...
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-10-15
Jim Procter
JAL-1159 Merging 2.8.1 patches and Anne Menards work...
tree
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commitdiff
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
tree
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commitdiff
2013-08-30
darolmar
i18n date/time handling
tree
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commitdiff
2013-08-29
darolmar
i18n
tree
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commitdiff
2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
tree
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commitdiff
2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-13
Jim Procter
Merge branch 'JAL-1314_headlessFlag' into develop
tree
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commitdiff
2013-06-13
Jim Procter
JAL-1314 allow 'nogui' and 'headless' as synonyms for...
tree
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commitdiff
2013-05-24
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
tree
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commitdiff
2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into develop
tree
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commitdiff
2013-05-13
Jim Procter
JAL-1289 call oninit callback even if no alignment...
tree
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commitdiff
2012-12-07
jprocter
menu for choosing between 'protein' and 'RNA' mode...
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-04
jprocter
Merge branch 'develop' into Release_2_8_Branch
tree
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commitdiff
2012-10-04
jprocter
JAL-1188 - set the user agent to Jalview Desktop/$...
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-10-03
jprocter
JAL-1026 - insert a sensible default for proxy so Jalvi...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 use dialog queue for usage statistics prompt
tree
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commitdiff
2012-08-24
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-24
jprocter
JAL-1087 skip processing any of the other command line...
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
2012-05-23
jprocter
JAL-1078 - extend applet cut'n'paste features/annotatio...
tree
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commitdiff
2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
tree
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commitdiff
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
tree
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commitdiff
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
tree
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commitdiff
2012-02-29
jprocter
JAL-972 - refactored local source builder to registry...
tree
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commitdiff
2012-02-13
jprocter
remove dead imports
tree
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commitdiff
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
tree
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commitdiff
2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
tree
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commitdiff
2011-11-09
jprocter
(JAL-985,JAL-986) preferences documentation
tree
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commitdiff
2011-11-09
jprocter
(JAL-986) getter for integer user preference properties
tree
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commitdiff
2011-10-27
jprocter
(JAL-969) todo test re refactoring and possible change...
tree
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commitdiff
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
tree
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commitdiff
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
tree
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commitdiff
2011-10-21
jprocter
(JAL-962) rejig parameter processing order so groups...
tree
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commitdiff
2011-10-11
jprocter
normalised logo rendering (JAL-958)
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
tree
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commitdiff
2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
tree
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commitdiff
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
tree
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commitdiff
2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
tree
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commitdiff
2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
tree
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commitdiff
2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
tree
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commitdiff
2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
tree
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commitdiff
2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
tree
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
tree
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commitdiff
2011-07-22
jprocter
method to get a user default colour (JAL-234)
tree
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commitdiff
2011-07-03
jprocter
extracted jalviewlite API calls as separate interface...
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-05-05
jprocter
improved javascript callback execution thread and provi...
tree
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commitdiff
2011-04-08
jprocter
imported properties via -props should never be overwritten
tree
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commitdiff
2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
tree
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commitdiff
2011-02-04
jprocter
JAL-761
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-18
jprocter
removed securityException caused by accessing class...
tree
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commitdiff
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
tree
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commitdiff
2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
tree
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commitdiff
2011-01-17
jprocter
warn user that no JS callbacks will work by default...
tree
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commitdiff
2011-01-17
jprocter
revised default separator string expression to avoid...
tree
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commitdiff
2011-01-12
jprocter
handlers with no specified alignframe broadcast events...
tree
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commitdiff
2011-01-12
jprocter
1.1 compat
tree
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commitdiff
2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
tree
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commitdiff
2011-01-07
jprocter
refactored dropFile allowing known information to be...
tree
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commitdiff
2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
tree
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commitdiff
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