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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
commands
/
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-353 updated patch for undo successive remove redund...
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commitdiff
2014-10-29
Charles Ofoegbu
JAL-353 updated patch for undo successive remove redund...
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-353 undo for successive removal of redundant sequen...
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-08-05
jprocter
JAL-1131 - todos for later versions
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commitdiff
2012-08-05
jprocter
JAL-1131 ensure new dataset sequence is created if...
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commitdiff
2012-06-13
jprocter
javatidy
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-08-26
jprocter
bugfix todo for the 'edit sequence' command
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commitdiff
2007-06-17
jprocter
recovery of identical dataset sequence object on undo...
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commitdiff
2007-05-04
amwaterhouse
Annotations do not extend when full alignment is adjusted
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commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
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commitdiff
2007-04-27
jprocter
bugfix for deleted annotation undo
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
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commitdiff
2007-04-19
jprocter
ensure edit command gapChar is updated and used for...
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commitdiff
2007-04-19
amwaterhouse
REPLACE added to edit command
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commitdiff
2007-04-18
amwaterhouse
Pad gaps when annotation editing
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commitdiff
2007-04-17
jprocter
paste/cut now adds or removes associated AlignmentAnnot...
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commitdiff
2007-02-27
amwaterhouse
jmol added
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commitdiff
2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-02-05
amwaterhouse
Alignment editing columns 0 and 1 fixed
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commitdiff
2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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commitdiff
2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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commitdiff
2007-02-02
amwaterhouse
getWidth -1 for trim right
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commitdiff
2007-02-02
amwaterhouse
check annotation size when cutting
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commitdiff
2007-01-31
amwaterhouse
Adjust features when cutting and pasting
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commitdiff
2007-01-26
amwaterhouse
Adjusts annotations for sequence edits
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commitdiff
2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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commitdiff
2007-01-24
amwaterhouse
This constructor is never called
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commitdiff
2006-12-05
amwaterhouse
Sequence is char []
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commitdiff
2006-11-30
amwaterhouse
char array replaces string for cuts
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commitdiff
2006-11-21
amwaterhouse
Undo cut from end of alignment, padding on
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commitdiff
2006-11-15
amwaterhouse
Must be able to find originating alignment modified
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commitdiff
2006-10-26
amwaterhouse
Returns number of columns deleted
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commitdiff
2006-10-26
amwaterhouse
Remove system.out
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commitdiff
2006-10-26
amwaterhouse
check command.string[i] is not null
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commitdiff
2006-10-26
amwaterhouse
Sequence length maybe less than end
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commitdiff
2006-10-26
amwaterhouse
Known bugs fixed
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commitdiff
2006-10-25
amwaterhouse
Adjusts columnSelection correctly
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commitdiff
2006-10-24
amwaterhouse
Commands which can be done, or undone
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commitdiff