2014-12-15 |
Jim Procter | JAL-1620 version bump and release notes |
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2014-11-28 |
gmungoc | JAL-1610 check reference annotations against alignment... |
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2014-11-17 |
Jim Procter | formatting |
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2014-11-17 |
Jim Procter | JAL-1587 JAL-407 instrument setDataset to add dataset... |
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2014-10-10 |
gmungoc | JAL-1264 reverted (removed added method) |
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2014-10-08 |
gmungoc | Merge branch 'Release_2_8_2_Branch' into |
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2014-10-07 |
gmungoc | JAL-1264 wip |
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2014-09-27 |
darolmar | JAL-1355 |
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2014-09-23 |
darolmar | JAL-1355 |
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2014-06-06 |
Jim Procter | JAL-1517 source formatting |
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2014-06-06 |
Jim Procter | JAL-1517 fix copyright for 2.8.2 |
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2014-06-05 |
Jim Procter | JAL-1517 update copyright to version 2.8.2 |
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2014-05-22 |
Jim Procter | JAL-1503 update version in GPL header |
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2014-05-02 |
Jim Procter | Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer... |
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2014-05-01 |
Jim Procter | JAL-1492 JAL-1397 make AnnotatedCollectionI context... |
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2014-01-29 |
Jim Procter | JAL-1432 updated copyright notices |
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2013-10-11 |
Jim Procter | JAL-1114 promote start/end attributes to gettable field... |
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2013-08-30 |
Jim Procter | JAL-1367 promote the existing representative sequence... |
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2013-06-23 |
Jim Procter | JAL-1230 proxy method for synchronising internal Alignm... |
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2013-05-31 |
Jim Procter | JAL-1259 patch to avoid NPE |
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2013-05-31 |
Jim Procter | JAL-1259 patch to avoid NPE |
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2012-10-22 |
jprocter | Jalview 2.8 Source Header |
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2012-10-03 |
jprocter | formatting |
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2012-07-03 |
jprocter | JAL-961 allow calcId to be specified independently... |
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2012-06-13 |
jprocter | javatidy |
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2012-06-12 |
jprocter | JAL-1115 refactor reordering code operating directly... |
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2012-06-12 |
jprocter | JAL-1115 refactor base collection for Alignment from... |
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2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashta... |
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2012-05-23 |
jprocter | JAL-961 - annotatable datamodel objects can be queried... |
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2012-05-22 |
jprocter | Merge remote-tracking branch 'origin/Tcoffee_JAL-1065... |
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2011-10-10 |
jprocter | update author list in license for (JAL-826) |
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2011-10-04 |
jprocter | Merge remote-tracking branch 'remotes/origin/2_5_1_rna_... |
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2011-09-27 |
jprocter | apply version 2.7 copyright |
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2011-08-15 |
janengelhardt | JAL-891; Sorting of Structure logo implemented; bug... |
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2011-08-11 |
janengelhardt | JAL-885; hasRNAStructure method was introduced to Align... |
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2011-04-21 |
jprocter | allow an alignment annotation row to be removed and... |
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2010-11-12 |
jprocter | patch for JAL-700 |
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2010-09-23 |
jprocter | apply jalview code style |
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2010-09-23 |
jprocter | Jalview 2.6 source licence |
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2010-04-30 |
jprocter | jalview 2.5 release banner |
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2010-04-29 |
jprocter | isAligned assertion (bug 0008144) |
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2010-04-28 |
jprocter | group/annotation association housekeeping |
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2009-07-24 |
jprocter | implement new insert annotation row method and ensure... |
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2009-06-08 |
jprocter | apply gpl development license |
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2008-12-19 |
jprocter | left and right justify method |
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2008-12-05 |
jprocter | support for multiple accession retrieval from a databas... |
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2008-11-12 |
jprocter | javadoc and new method to get alignment sequence index... |
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2008-09-04 |
jprocter | merge from 2_4_Release branch |
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2008-07-18 |
jprocter | allow findSeq to begin *after* a given sequence in... |
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2007-11-30 |
jprocter | case invariant matching of seqeunce feature to sequence... |
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2007-08-30 |
jprocter | moved dataset sequence creation onto sequence method |
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2007-08-24 |
jprocter | dataset alignments have a reference count which must... |
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2007-07-13 |
jprocter | mapping bug fixes |
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2007-06-17 |
jprocter | AlignedCodonFrame holds mapping information between... |
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2007-05-10 |
jprocter | fixed array index out of bounds when not removing align... |
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2007-05-07 |
amwaterhouse | tIndex prevented deletion of last annotation |
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2007-05-02 |
jprocter | return flag indicating if annotations were actually... |
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2007-05-01 |
jprocter | removeAlignmentAnnotation only removes annotation objec... |
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2007-04-27 |
jprocter | documentation and getProperties method |
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2007-04-25 |
amwaterhouse | alignmentProperties added |
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2007-04-23 |
amwaterhouse | remove seqref annotations |
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2007-04-17 |
jprocter | copy constructors and AlignmentAnnotation sequenceRef... |
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2007-04-02 |
amwaterhouse | Destroy alignment moved to finalize |
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2007-04-02 |
amwaterhouse | Destroy aligment method added |
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2007-02-07 |
amwaterhouse | Formatting |
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2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment... |
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2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand |
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2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert |
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2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
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2006-12-21 |
amwaterhouse | remove unnecessary import |
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2006-12-05 |
amwaterhouse | Sequence is char [] |
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2006-11-23 |
amwaterhouse | Dont make groups of hidden sequences |
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2006-11-13 |
amwaterhouse | Sequence colour moved to viewport |
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2006-11-08 |
amwaterhouse | currentSeq and set description in dataset |
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2006-11-03 |
amwaterhouse | Consensus may already have been removed |
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2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete |
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2006-10-25 |
amwaterhouse | We can delete sequence 0 |
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2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
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2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
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2006-10-09 |
jprocter | fixed getCompactAlignment method to return proper cigar... |
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2006-10-06 |
amwaterhouse | AAFrequency optimized |
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2006-08-21 |
amwaterhouse | header updated |
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2006-08-21 |
jprocter | removeGaps method can record changes in alignment colum... |
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2006-08-18 |
amwaterhouse | dont remove all representative seqs on delete groups |
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2006-08-18 |
amwaterhouse | remove all representative seqs on delete groups |
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2006-08-15 |
amwaterhouse | Move features to dataset |
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2006-08-14 |
amwaterhouse | findSequenceMatch returns multiple sequences |
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2006-08-09 |
jprocter | alignment from seqCigars will correctly mark deleted... |
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2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
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2006-07-28 |
amwaterhouse | 1.1 compatible |
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2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
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2006-07-26 |
amwaterhouse | seqs[j] replaces current |
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2006-07-26 |
amwaterhouse | Remove left, right, empty cols work on hidden reps |
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2006-07-25 |
amwaterhouse | If seq has a dataset, dont clear it |
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2006-07-21 |
amwaterhouse | Remove note |
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2006-07-13 |
amwaterhouse | Sequence is private |
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2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed |
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2006-06-09 |
amwaterhouse | getSequencesArray |
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2006-05-11 |
amwaterhouse | Recently loaded files, urls, append sequences to Alignment |
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