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Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / datamodel / features /
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... tree | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test tree | commitdiff
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1 tree | commitdiff
2020-06-04 gmungocJAL-3446 post-merge unit test fixes, formatting tree | commitdiff
2020-06-03 BobHansonJAL-3664 support for user.home, user.dir, user tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... tree | commitdiff
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1 tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... tree | commitdiff
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ tree | commitdiff
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught tree | commitdiff
2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order... tree | commitdiff
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene... tree | commitdiff
2018-07-06 gmungocJAL-3032 use Math.min/max not Float.min/max tree | commitdiff
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed... tree | commitdiff
2018-01-17 gmungocMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc tree | commitdiff
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience tree | commitdiff
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature... tree | commitdiff
2017-11-24 gmungocJAL-2808 update spike to latest tree | commitdiff
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 source code licencing tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated featur... tree | commitdiff
2017-11-06 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into... tree | commitdiff
2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes description... tree | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest tree | commitdiff
2017-11-02 gmungocJAL-2808 new Filters tab in Feature Settings tree | commitdiff
2017-10-30 gmungocJAL-2792 Javadoc updates tree | commitdiff
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature... tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-14 gmungocJAL-2541 save/Undo only 'diffs' for features with Cut... tree | commitdiff
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress) tree | commitdiff
2017-08-09 gmungocJAL-2480 inline one method, improve comments tree | commitdiff
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates tree | commitdiff
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures... tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage tree | commitdiff
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-23 gmungocJAL-2480 methods to get features for group tree | commitdiff
2017-05-22 gmungocJAL-2480 always include all non-positional features... tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... tree | commitdiff
2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning... tree | commitdiff
2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and... tree | commitdiff
2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types... tree | commitdiff
2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature tree | commitdiff
2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc tree | commitdiff
2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api tree | commitdiff
2017-04-17 gmungocJAL-2446 comment updates tree | commitdiff
2017-04-17 gmungocJAL-2446 promote Range from test to src to replace... tree | commitdiff
2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in Featu... tree | commitdiff
2017-04-17 gmungocJAL-2446 add call to SequenceFeatures.delete(); use... tree | commitdiff
2017-04-12 gmungocJAL-2446 getGroups, getFeatures for positional/non... tree | commitdiff
2017-04-11 gmungocJAL-2446 find feature types for one or more groups... tree | commitdiff
2017-04-11 gmungocJAL-2446 getFeatureTypesForGroup() added tree | commitdiff
2017-04-11 gmungocJAL-2446 added getFeatureGroups tree | commitdiff
2017-04-10 gmungocJAL-2446 SequenceFeatures.hasFeatures() added tree | commitdiff
2017-04-10 gmungocJAL-2446 FeatureStore.isEmpty() added tree | commitdiff
2017-04-07 gmungocJAL-2446 fix size maintenance during add tree | commitdiff
2017-04-07 gmungocJAL-2446 added delete/contains to pseudo-random tests... tree | commitdiff
2017-04-06 gmungocJAL-2446 added contains, delete, checks for inclusion... tree | commitdiff
2017-04-06 gmungocJAL-2446 pseudo-random test of findOverlaps, bug fix... tree | commitdiff
2017-04-05 gmungocJAL-2446 various get and find methods added with test... tree | commitdiff
2017-04-03 gmungocJAL-2446 pseudo-random generator unit test, and fixes... tree | commitdiff
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress tree | commitdiff