Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / datamodel / features /
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1
2020-06-04 gmungocJAL-3446 post-merge unit test fixes, formatting
2020-06-03 BobHansonJAL-3664 support for user.home, user.dir, user
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
2019-06-06 gmungocMerge branch 'develop' into trialMerge
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL...
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught
2019-01-21 gmungocJAL-3187 findFeaturesAtResidue answer in render order...
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL...
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
2018-07-06 gmungocJAL-3032 use Math.min/max not Float.min/max
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
2018-01-17 gmungocMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures
2018-01-10 gmungocJAL-1793 update spike branch to latest
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature...
2017-11-24 gmungocJAL-2808 update spike to latest
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character...
2017-11-17 Jim ProcterJAL-2698 source code licencing
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated featur...
2017-11-06 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into...
2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes description...
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-11-02 gmungocJAL-2808 new Filters tab in Feature Settings
2017-10-30 gmungocJAL-2792 Javadoc updates
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-14 gmungocJAL-2541 save/Undo only 'diffs' for features with Cut...
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress)
2017-08-09 gmungocJAL-2480 inline one method, improve comments
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in...
2017-05-23 gmungocJAL-2480 methods to get features for group
2017-05-22 gmungocJAL-2480 always include all non-positional features...
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied...
2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures()
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning...
2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and...
2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types...
2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature
2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc
2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api
2017-04-17 gmungocJAL-2446 comment updates
2017-04-17 gmungocJAL-2446 promote Range from test to src to replace...
2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in Featu...
2017-04-17 gmungocJAL-2446 add call to SequenceFeatures.delete(); use...
2017-04-12 gmungocJAL-2446 getGroups, getFeatures for positional/non...
2017-04-11 gmungocJAL-2446 find feature types for one or more groups...
2017-04-11 gmungocJAL-2446 getFeatureTypesForGroup() added
2017-04-11 gmungocJAL-2446 added getFeatureGroups
2017-04-10 gmungocJAL-2446 SequenceFeatures.hasFeatures() added
2017-04-10 gmungocJAL-2446 FeatureStore.isEmpty() added
2017-04-07 gmungocJAL-2446 fix size maintenance during add
2017-04-07 gmungocJAL-2446 added delete/contains to pseudo-random tests...
2017-04-06 gmungocJAL-2446 added contains, delete, checks for inclusion...
2017-04-06 gmungocJAL-2446 pseudo-random test of findOverlaps, bug fix...
2017-04-05 gmungocJAL-2446 various get and find methods added with test...
2017-04-03 gmungocJAL-2446 pseudo-random generator unit test, and fixes...
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress