| 2016-06-20 |
Jim Procter | JAL-2110 copy alcodonframes only if copy constructor... |
tree | commitdiff |
| 2016-06-19 |
Jim Procter | JAL-2110 JAL-2131 JAL-1765 remove reference to jalview... |
tree | commitdiff |
| 2016-06-16 |
Jim Procter | JAL-2110 todo - select mappings involving sequences... |
tree | commitdiff |
| 2016-06-16 |
Jim Procter | JAL-2110 equals and hashcode should check fromSeq |
tree | commitdiff |
| 2016-06-16 |
Jim Procter | JAL-2110 typo caused infinite loop |
tree | commitdiff |
| 2016-06-16 |
gmungoc | JAL-2112 optimisation of EMBL CDS parsing |
tree | commitdiff |
| 2016-06-15 |
Jim Procter | Merge branch 'develop' into features/JAL-2110_crossRefD... |
tree | commitdiff |
| 2016-06-14 |
gmungoc | JAL-2114 more helpful reporting of parse failures |
tree | commitdiff |
| 2016-06-14 |
gmungoc | JAL-2110 ensure "UniProtKB/Swiss-Prot" dbrefs canonical... |
tree | commitdiff |
| 2016-06-14 |
gmungoc | JAL-1686 JAL-2110 equals and/or hashCode method added |
tree | commitdiff |
| 2016-06-09 |
gmungoc | JAL-2110 work in progress |
tree | commitdiff |
| 2016-06-01 |
Jim Procter | fix build |
tree | commitdiff |
| 2016-05-31 |
gmungoc | JAL-2023 adjustments to mappings added for split frame... |
tree | commitdiff |
| 2016-05-31 |
gmungoc | JAL-2110 refactor + tests to allow a dbref version... |
tree | commitdiff |
| 2016-05-31 |
Jim Procter | Merge branch 'develop' into features/JAL-2113_emblXml1.2 |
tree | commitdiff |
| 2016-05-30 |
gmungoc | JAL-1989 equals method strengthened to fully match... |
tree | commitdiff |
| 2016-05-30 |
Jim Procter | Merge branch 'develop' into efficiency/JAL-2034_JAL... |
tree | commitdiff |
| 2016-05-27 |
gmungoc | JAL-1989 added hashCode and equals, renamed field to... |
tree | commitdiff |
| 2016-05-26 |
gmungoc | JAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2 |
tree | commitdiff |
| 2016-05-23 |
gmungoc | JAL-2113 remove spaces in sequence from unmarshalling... |
tree | commitdiff |
| 2016-05-23 |
gmungoc | JAL-2114 save 'raw' ENA location as a sequence feature... |
tree | commitdiff |
| 2016-05-20 |
gmungoc | JAL-2113 embl_mapping.xml and code updated for EMBL... |
tree | commitdiff |
| 2016-05-17 |
tcofoegbu | JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef |
tree | commitdiff |
| 2016-05-13 |
gmungoc | JAL-2105 capture Ensembl data version, check REST versi... |
tree | commitdiff |
| 2016-05-05 |
Jim Procter | JAL-192 patch for off-by one and pathological case... |
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-192 need visible and actual sequence limits for... |
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-192 fix bounds when no hidden regions, and when... |
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-966 JAL-1553
todo: remove UI components from Colum... |
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-1551 formatting
|
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-192 ‘efficiently’ locate visible bounds for a seque... |
tree | commitdiff |
| 2016-04-29 |
Jim Procter | JAL-1551 formatting |
tree | commitdiff |
| 2016-04-23 |
Jim Procter | JAL-2075 findPosition for SeqCigar (with test) |
tree | commitdiff |
| 2016-04-23 |
Jim Procter | JAL-2075 formatting |
tree | commitdiff |
| 2016-04-14 |
gmungoc | JAL-2041 add ID,clinical_significance to feature attrib... |
tree | commitdiff |
| 2016-04-14 |
gmungoc | JAL-2049 small refactor of constructors to avoid code... |
tree | commitdiff |
| 2016-04-13 |
Jim Procter | Merge branch 'bug/JAL-2046_ds_sharing_features_broken... |
tree | commitdiff |
| 2016-04-11 |
tcofoegbu | JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... |
tree | commitdiff |
| 2016-04-11 |
Jim Procter | Merge branch 'develop' into efficiency/JAL-2034_JAL... |
tree | commitdiff |
| 2016-04-08 |
Jim Procter | JAL-2050 JAL-1722 new getSelectedRange() method to... |
tree | commitdiff |
| 2016-04-08 |
Jim Procter | JAL-2053 JAL-1551 javadoc and simpler code |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 add/delete SequenceFeature operate on dataset... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 setSequenceFeature contract implementation... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 explicit contract for get/set SequenceFeatures... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 remove javadoc |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 simpler deriveSequence - promote to dataset... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 clarify contract for copy constructor and... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 explicitly copy char[] when cloning sequence... |
tree | commitdiff |
| 2016-04-05 |
Jim Procter | JAL-2046 safer createDatasetSequence manipulates privat... |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 drop isSelected(int) in favour of original... |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 catch -ve column values |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 faster check for a column being selected |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 javadoc |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 faster getMax/getMin selected column, with... |
tree | commitdiff |
| 2016-04-04 |
Jim Procter | JAL-2001 JAL-1722 - store selection as ArrayList and... |
tree | commitdiff |
| 2016-04-01 |
gmungoc | JAL-1705 ensure the right mapping is used to align... |
tree | commitdiff |
| 2016-04-01 |
gmungoc | JAL-1705 reworked AlignmentUtils.makeCdsAlignment and... |
tree | commitdiff |
| 2016-04-01 |
gmungoc | JAL-1705 include stop codon in mapped CDS range so... |
tree | commitdiff |
| 2016-04-01 |
gmungoc | JAL-2037 set DBRefEntry.version to "0" not "" in EMBL... |
tree | commitdiff |
| 2016-03-28 |
gmungoc | JAL-1705 Javadoc / debug output tweaks |
tree | commitdiff |
| 2016-03-25 |
Jim Procter | JAL-2034 JAL-1421 use ArrayLists, and make ‘selection... |
tree | commitdiff |
| 2016-03-25 |
Jim Procter | JAL-2034 make colour scheme update optional when group... |
tree | commitdiff |
| 2016-03-25 |
Jim Procter | JAL-1551 |
tree | commitdiff |
| 2016-03-21 |
gmungoc | Merge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... |
tree | commitdiff |
| 2016-03-21 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
| 2016-03-21 |
gmungoc | JAL-2029 further fixes to get correct xrefs and xrefs... |
tree | commitdiff |
| 2016-03-21 |
gmungoc | JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings |
tree | commitdiff |
| 2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
| 2016-03-03 |
tcofoegbu | JAL-1919 fixed bug causing PDBfile test failure |
tree | commitdiff |
| 2016-03-03 |
tcofoegbu | JAL-1919 PDBfile and JmolParser refactor |
tree | commitdiff |
| 2016-03-02 |
gmungoc | JAL-1705 include any unmapped protein start 'X' when... |
tree | commitdiff |
| 2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 handle case of sequence with no dataset sequence |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(... |
tree | commitdiff |
| 2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
| 2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence... |
tree | commitdiff |
| 2016-01-23 |
gmungoc | JAL-1705 todo comment re writing DBRefEntry/SequenceFea... |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 ENSEMBL added, unused constants removed |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 suppress jvsuffix (for sequence id matching... |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 toString() added (for debugging) |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 isEmpty() and (debug) toString() methods added |
tree | commitdiff |
| 2016-01-21 |
tcofoegbu | JAL-1919 basic support for importing and viewing mmCIF... |
tree | commitdiff |
| 2016-01-11 |
gmungoc | JAL-1989 more unit tests and encapsulation for ColumnSe... |
tree | commitdiff |
| 2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 encapsulate Strand, Attributes, Status of Seque... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame internal refactor, merge... |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mapping in SearchResults... |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 mappings always reside on the dataset alignment... |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 (experimental) methods to resolve dummy to... |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 getStrand javadoc/refactor/test |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-1421 use generics JAL-1551 @Override annotations... |
tree | commitdiff |
| 2015-11-21 |
gmungoc | JAL-653 JAL-1968 FeaturesFile now handles Jalview or... |
tree | commitdiff |
| 2015-11-16 |
tcofoegbu | JAL-1967 JAL-1479 refactored sequence<->structure mappi... |
tree | commitdiff |
| 2015-11-05 |
tcofoegbu | JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... |
tree | commitdiff |
| 2015-10-29 |
tcofoegbu | JAL-1926 JAL-1479 updated PDBfile fetcher to add source... |
tree | commitdiff |
| 2015-10-28 |
tcofoegbu | JAL-1479 added support for SIFTs mapping output viewing... |
tree | commitdiff |
| 2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
tree | commitdiff |
| 2015-10-15 |
tcofoegbu | JAL-1479 refactored SequenceI interface - changed getDB... |
tree | commitdiff |
| 2015-10-14 |
tcofoegbu | JAL-1926 added supporting model changes to enable savin... |
tree | commitdiff |
| next |
git://source.jalview.org / jalview.git / history