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format adapter should return AlignmentI
[jalview.git] / src / jalview / datamodel /
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when... tree | commitdiff
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor tree | commitdiff
2012-08-31 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... tree | commitdiff
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex tree | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. tree | commitdiff
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2012-07-10 Anne Menardv2 tree | commitdiff
2012-07-05 Anne MenardAdd support RNAML format tree | commitdiff
2012-07-03 jprocterJAL-961 allow calcId to be specified independently... tree | commitdiff
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop tree | commitdiff
2012-06-13 jprocterjavatidy tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly... tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... tree | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... tree | commitdiff
2012-05-24 jprocterensure annotation isn't added twice - note - this could... tree | commitdiff
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried... tree | commitdiff
2012-05-22 jprocterupdate the copy constructor tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2011-12-08 jprocter(JAL-1013) generalise binary sequence encoding scheme... tree | commitdiff
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot... tree | commitdiff
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... tree | commitdiff
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... tree | commitdiff
2011-10-21 jprocternew base class to hold core visualization settings... tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in... tree | commitdiff
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied... tree | commitdiff
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... tree | commitdiff
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... tree | commitdiff
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... tree | commitdiff
2011-07-25 janengelhardtFurther structure accessing feature tree | commitdiff
2011-07-25 janengelhardtContainer for VARNA classes are created according to... tree | commitdiff
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-08 jprocteropen each query result from an alignment datasource... tree | commitdiff
2011-07-06 jprocterensure selseq is trimmed to just sequences included... tree | commitdiff
2011-05-05 jprocteruncommentable debug message for JAL-771 tree | commitdiff
2011-04-21 jprocterallow an alignment annotation row to be removed and... tree | commitdiff
2011-04-21 jprocterallow an existing alignment annotation row to be bound... tree | commitdiff
2011-02-27 jprocterfirst patch for JAL-774 - ensure end is a valid bound... tree | commitdiff
2011-01-05 jprocterpropagated groups trimmed to correct region on viscontig tree | commitdiff
2011-01-05 jproctergraphThreshold not being copied by constructor tree | commitdiff
2010-12-17 jprocteradjust start and end of intersecting group relative... tree | commitdiff
2010-12-17 jprocter1.1 compat tree | commitdiff
2010-12-17 jprocter1.1 compat tree | commitdiff
2010-12-17 jprocterrefactored gap insert/visible view modification code... tree | commitdiff
2010-12-17 jprocterjavadoc tree | commitdiff
2010-12-10 jprocterremove implicit non-1.1 compatible call tree | commitdiff
2010-12-09 jprocterjava 1.1 patches tree | commitdiff
2010-12-09 jprocterjava 1.1 patches tree | commitdiff
2010-12-09 jprocternew methods and test code for JAL-716 tree | commitdiff
2010-12-09 jprocternew constructor and refactored methods for intersecting... tree | commitdiff
2010-12-09 jprocternew methods for testing for/storing selection/group... tree | commitdiff
2010-12-09 jprocterjavadoc and additional convenience method for JAL-716 tree | commitdiff
2010-12-02 jprocterrefactored visible contig/gap map array intersection... tree | commitdiff
2010-11-14 jprocterzero length operations are valid tree | commitdiff
2010-11-12 jprocterpatch for JAL-700 tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu... tree | commitdiff
2010-06-08 jprocterPatch for incorrect column selection when hidden region... tree | commitdiff
2010-06-06 jprocterpatch for JAL-542 tree | commitdiff
2010-06-03 jprocterjavadoc re JAL-554 tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2010-04-29 jproctermake sure references are intact when group annotation... tree | commitdiff
2010-04-29 jprocterisAligned assertion (bug 0008144) tree | commitdiff
2010-04-28 jproctergroup/annotation association housekeeping tree | commitdiff
2010-04-23 jprocterjavadoc tree | commitdiff
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday. tree | commitdiff
2010-04-14 jprocterprofile visualizations are now logos tree | commitdiff
2010-03-30 jproctername update for group autoannotation and consensus... tree | commitdiff
2010-03-26 jproctercomments tree | commitdiff
2010-03-22 jproctertodo and sensible default setting of min/max for histog... tree | commitdiff
2010-03-11 jprocterindividual label format settings for each annotation... tree | commitdiff
2009-11-09 jprocterno Vector(Vector) copy constructor in 1.2 tree | commitdiff
2009-11-06 jproctersetting and merging selected columns from another selec... tree | commitdiff
2009-08-21 jprocterbasic implementation of profile display and todos tree | commitdiff
2009-08-21 jproctertodo tree | commitdiff
2009-07-24 jprocterimplement new insert annotation row method and ensure... tree | commitdiff
2009-07-24 jprocterinsert annotation at specific position tree | commitdiff
2009-07-24 jprocteroptional sequencegroup ref for annotation row tree | commitdiff
2009-07-24 jproctersequence groups carry their own conservation and consen... tree | commitdiff
2009-06-24 jprocterfix to cope with EMBL records containing a CDS fragment... tree | commitdiff
2009-06-19 jprocterparent db references and mappings added to retrieved... tree | commitdiff
2009-06-19 jprocterintersect did not intersect (used in selection listener) tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2009-06-01 jprocterapply method for a NodeTransform to nodes in a tree tree | commitdiff
2009-06-01 jprocterjavadoc tree | commitdiff
2009-04-14 jprocterpatch to fix occasional arrayoutofbounds exception... tree | commitdiff
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec... tree | commitdiff
2009-02-06 jproctershowUnconserved group attribute tree | commitdiff
2008-12-19 jprocteravoid null pointer exception when groupName is not set tree | commitdiff
2008-12-19 jprocterleft and right justify method tree | commitdiff
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