format adapter should return AlignmentI
[jalview.git] / src / jalview / datamodel /
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when...
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-24 jprocterensure annotation isn't added twice - note - this could...
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
2012-05-22 jprocterupdate the copy constructor
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-12-08 jprocter(JAL-1013) generalise binary sequence encoding scheme...
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot...
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocternew base class to hold core visualization settings...
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in...
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied...
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug...
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align...
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2011-07-25 janengelhardtFurther structure accessing feature
2011-07-25 janengelhardtContainer for VARNA classes are created according to...
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580
2011-07-25 janengelhardtStart merging of Laurens Code
2011-07-08 jprocteropen each query result from an alignment datasource...
2011-07-06 jprocterensure selseq is trimmed to just sequences included...
2011-05-05 jprocteruncommentable debug message for JAL-771
2011-04-21 jprocterallow an alignment annotation row to be removed and...
2011-04-21 jprocterallow an existing alignment annotation row to be bound...
2011-02-27 jprocterfirst patch for JAL-774 - ensure end is a valid bound...
2011-01-05 jprocterpropagated groups trimmed to correct region on viscontig
2011-01-05 jproctergraphThreshold not being copied by constructor
2010-12-17 jprocteradjust start and end of intersecting group relative...
2010-12-17 jprocter1.1 compat
2010-12-17 jprocter1.1 compat
2010-12-17 jprocterrefactored gap insert/visible view modification code...
2010-12-17 jprocterjavadoc
2010-12-10 jprocterremove implicit non-1.1 compatible call
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocternew methods and test code for JAL-716
2010-12-09 jprocternew constructor and refactored methods for intersecting...
2010-12-09 jprocternew methods for testing for/storing selection/group...
2010-12-09 jprocterjavadoc and additional convenience method for JAL-716
2010-12-02 jprocterrefactored visible contig/gap map array intersection...
2010-11-14 jprocterzero length operations are valid
2010-11-12 jprocterpatch for JAL-700
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-08 jprocterPatch for incorrect column selection when hidden region...
2010-06-06 jprocterpatch for JAL-542
2010-06-03 jprocterjavadoc re JAL-554
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jproctermake sure references are intact when group annotation...
2010-04-29 jprocterisAligned assertion (bug 0008144)
2010-04-28 jproctergroup/annotation association housekeeping
2010-04-23 jprocterjavadoc
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday.
2010-04-14 jprocterprofile visualizations are now logos
2010-03-30 jproctername update for group autoannotation and consensus...
2010-03-26 jproctercomments
2010-03-22 jproctertodo and sensible default setting of min/max for histog...
2010-03-11 jprocterindividual label format settings for each annotation...
2009-11-09 jprocterno Vector(Vector) copy constructor in 1.2
2009-11-06 jproctersetting and merging selected columns from another selec...
2009-08-21 jprocterbasic implementation of profile display and todos
2009-08-21 jproctertodo
2009-07-24 jprocterimplement new insert annotation row method and ensure...
2009-07-24 jprocterinsert annotation at specific position
2009-07-24 jprocteroptional sequencegroup ref for annotation row
2009-07-24 jproctersequence groups carry their own conservation and consen...
2009-06-24 jprocterfix to cope with EMBL records containing a CDS fragment...
2009-06-19 jprocterparent db references and mappings added to retrieved...
2009-06-19 jprocterintersect did not intersect (used in selection listener)
2009-06-08 jprocterapply gpl development license
2009-06-01 jprocterapply method for a NodeTransform to nodes in a tree
2009-06-01 jprocterjavadoc
2009-04-14 jprocterpatch to fix occasional arrayoutofbounds exception...
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec...
2009-02-06 jproctershowUnconserved group attribute
2008-12-19 jprocteravoid null pointer exception when groupName is not set
2008-12-19 jprocterleft and right justify method
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