2022-12-14 |
Jim Procter | Merge branch 'develop' into update_212_Dec_merge_with_2... |
tree | commitdiff |
2022-12-13 |
Jim Procter | Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl... |
tree | commitdiff |
2022-11-21 |
Jim Procter | Merge commit 'alpha/update_2_12_for_2_11_2_series_merge... |
tree | commitdiff |
2022-06-06 |
Jim Procter | JAL-4023 store distances as doubles |
tree | commitdiff |
2022-04-16 |
Jim Procter | JAL-3365 expand range of allowed DSSP secondary structu... |
tree | commitdiff |
2022-03-25 |
Jim Procter | JAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3746 apply copyright to source |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3438 spotless for 2.11.2.0 |
tree | commitdiff |
2022-02-14 |
Jim Procter | JAL-3956 - PDBEntry objects constructed from 3D-Beacons... |
tree | commitdiff |
2022-02-04 |
Jim Procter | Merge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2 |
tree | commitdiff |
2022-02-04 |
Jim Procter | JAL-3806 require mapping extent covers both sequence... |
tree | commitdiff |
2022-01-28 |
Jim Procter | Merge branch 'merge/develop_JAL-3725' into develop |
tree | commitdiff |
2022-01-26 |
Jim Procter | Merge branch 'task/JAL-3763_newDatasetForCds' into... |
tree | commitdiff |
2022-01-26 |
gmungoc | JAL-3806 (2.11.2 version) more lax allowance (3 positio... |
tree | commitdiff |
2022-01-26 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2021-12-13 |
Jim Procter | JAL-3829 isCanonical should by default be false - ensur... |
tree | commitdiff |
2021-11-05 |
Jim Procter | JAL-3919 use model format field to ensure we get the... |
tree | commitdiff |
2021-10-06 |
Mateusz Warowny | JAL-3899 Update usages of uniquify and deuniquify. |
tree | commitdiff |
2021-10-01 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-21 |
Jim Procter | JAL-3829 ignore the fake ID generated when a PDB format... |
tree | commitdiff |
2021-09-20 |
Jim Procter | JAL-3829 ensure nulls are not wildcards when retrieving... |
tree | commitdiff |
2021-09-20 |
Jim Procter | JAL-3829 store 3db metadata on PDBEntry so it can be... |
tree | commitdiff |
2021-09-20 |
Jim Procter | JAL-3829 allow PDBEntry with file and ID with mismatchi... |
tree | commitdiff |
2021-09-17 |
Jim Procter | JAL-2226 new method to search for annotation matching... |
tree | commitdiff |
2021-09-16 |
gmungoc | JAL-3761 locateInFrom/To revised with tests; unused... |
tree | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 promote non-canonical version of dbref to... |
tree | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 passing test to verify a uniprot accession... |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3829 generalised Alphafold retrieval mechanism... |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3863 mark first accession retrieved from Uniprot... |
tree | commitdiff |
2021-08-30 |
Jim Procter | Merge branch 'feature/JAL-3855_ebi_alphafold_import... |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3829 3d-beacons structure chooser logic (not yet... |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 |
tree | commitdiff |
2021-06-09 |
Jim Procter | fixes JAL-3840 |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 failing test - show that addGaps overflows |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_1_4 |
tree | commitdiff |
2021-06-09 |
Jim Procter | fixes JAL-3840 |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 failing test - show that addGaps overflows |
tree | commitdiff |
2021-03-04 |
Jim Procter | Revert "Merge branch 'bug/JAL-3806_mappingCoversSequenc... |
tree | commitdiff |
2021-01-28 |
gmungoc | JAL-3806 more lax allowance (3 positions) for stop... |
tree | commitdiff |
2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
tree | commitdiff |
2020-10-28 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 Javadoc, check for null, additional tests |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 test coverage for AlignedCodonFrame.markMapped... |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 failsafe check for null |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 refactored getCoveringMapping for virtual... |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3700 additions and corrections to unit tests |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 Javadoc, check for null, additional tests task/JAL-3763_newDatasetForCds |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 test coverage for AlignedCodonFrame.markMapped... |
tree | commitdiff |
2020-10-15 |
gmungoc | JAL-3763 unused method removed |
tree | commitdiff |
2020-10-08 |
gmungoc | JAL-3763 failsafe check for null |
tree | commitdiff |
2020-10-08 |
gmungoc | JAL-3763 refactored getCoveringMapping for virtual... |
tree | commitdiff |
2020-09-23 |
Jim Procter | JAL-3748 not testing for sequence’s containment in... bug/JAL-3700_JAL-3748_reconstructCDSafterProteinMSA_for2_11_1_2 |
tree | commitdiff |
2020-09-23 |
Jim Procter | JAL-3748 fix compilation error |
tree | commitdiff |
2020-09-23 |
Jim Procter | JAL-3748 allow AlignedCodonFrame.covers to optionally... |
tree | commitdiff |
2020-09-22 |
Jim Procter | JAL-3748 don’t trash start/end on SequenceI reconstruct... |
tree | commitdiff |
2020-09-17 |
gmungoc | JAL-3700 additions and corrections to unit tests bug/JAL-3700_mapSequenceSelection |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3748 preserve sequence IDs from original alignment... |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3748 make findAlignedSequence require mapped from... |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3748 pass a list to findAlignedSequence to return... |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3700 JAL-3748 use AlignedCodonFrame.covers(seq... |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3700 JAL-3748 AlignedCodonFrame.covers(seq,true... |
tree | commitdiff |
2020-09-16 |
Jim Procter | Merge branch 'failingTest/JAL-3748_reconstructCDSafterP... |
tree | commitdiff |
2020-09-16 |
gmungoc | JAL-3700 fix for propagation of sort commands |
tree | commitdiff |
2020-09-16 |
gmungoc | JAL-3700 check for 'covering' mapping when matching... |
tree | commitdiff |
2020-09-16 |
Jim Procter | JAL-3748 store an AlignmentView for the complement... |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 merged with 2.11.2 develop |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
tree | commitdiff |
2020-08-10 |
gmungoc | JAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3700 fix for propagation of sort commands |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3700 check for 'covering' mapping when matching... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3621 update to intervalstore v1.1 |
tree | commitdiff |
2020-06-30 |
gmungoc | JAL-3446 unused imports removed |
tree | commitdiff |
2020-06-06 |
BobHanson | JAL-3446 adds Jmol viewer embedding. |
tree | commitdiff |
2020-06-04 |
gmungoc | JAL-3446 post-merge unit test fixes, formatting |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3664 support for user.home, user.dir, user |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-05-19 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-05-19 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol |
tree | commitdiff |
2020-05-18 |
gmungoc | JAL-3621 update to intervalstore v1.1 |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-05-01 |
gmungoc | JAL-3613 check sequence overlap when matching search... |
tree | commitdiff |
2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3407 add GPL license to Jalview source files |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3567 translated rather than imputed peptide |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 adjust layout of linked feature report, unit... |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 added 'imputed by Jalview' to protein conseque... |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-02-27 |
Jim Procter | Merge branch 'bug/JAL-3296changeStartInvalidateCursor... |
tree | commitdiff |
2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into... |
tree | commitdiff |
2019-11-01 |
Ben Soares | JAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-09-26 |
Jim Procter | JAL-3070 allow SequenceI.findPositions(0,column+1)... |
tree | commitdiff |
2019-09-26 |
gmungoc | JAL-2481 remove code duplication left by merge |
tree | commitdiff |
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