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JAL-1605 merge commit
[jalview.git] / src / jalview / datamodel /
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... tree | commitdiff
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... tree | commitdiff
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... tree | commitdiff
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-17 Jim Procterformatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... tree | commitdiff
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... tree | commitdiff
2014-11-12 Jim Procterjavadoc tree | commitdiff
2014-11-03 Jim ProcterJAL-1578 formatting and imports tree | commitdiff
2014-11-03 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor... tree | commitdiff
2014-11-03 Jim Procterjavadoc tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method tree | commitdiff
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit... tree | commitdiff
2014-10-23 gmungocJAL-1264 further refactoring and tests tree | commitdiff
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 source formatting tree | commitdiff
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequenc... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test... tree | commitdiff
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label) tree | commitdiff
2014-10-10 gmungocJAL-1264 reverted (removed added method) tree | commitdiff
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into tree | commitdiff
2014-10-07 gmungocJAL-1264 wip tree | commitdiff
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... tree | commitdiff
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector tree | commitdiff
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... tree | commitdiff
2014-09-27 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-23 gmungocJAL-1264 first cut of panel for annotation show/hide... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and... tree | commitdiff
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to... tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 javadoc tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 API javadoc tree | commitdiff
2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381 tree | commitdiff
2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into develop tree | commitdiff
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi... tree | commitdiff
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to... tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 proxy method for synchronising internal Alignm... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 bugfix equals tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva... tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 patch for regression noticed after patch to... tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-31 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-05-31 Jim ProcterJAL-1259 patch to avoid NPE tree | commitdiff
2013-05-31 Jim ProcterJAL-1259 patch to avoid NPE tree | commitdiff
2013-05-24 Jim ProcterJAL-1295 relaxed test for Annotation element equivalenc... tree | commitdiff
2013-05-24 Jim Procterjavadoc and formatting tree | commitdiff
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 sensible toString for benefi... tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2012-12-07 jprocterrevised renderer and annotation model to support differ... tree | commitdiff
2012-12-07 jprocterconvenience function to get the RNA model for an annota... tree | commitdiff
2012-12-07 jprocteruse new secstructure process algorithm tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when... tree | commitdiff
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