JAL-2422 save/restore ChimeraX session
[jalview.git] / src / jalview / ext / jmol / JalviewJmolBinding.java
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
2019-06-06 gmungocMerge branch 'develop' into trialMerge
2019-05-06 gmungocJAL-3244 delete obsolete method
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-02-19 gmungocJAL-3187 hacks to get peptide variant in to Jmol hover...
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou...
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify...
2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates bug/JAL-2899
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress...
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle...
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6...
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-07-11 gmungocfile format enum wip changes
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down...
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model...
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures...
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-30 gmungocJAL-1759 JMol now Jmol !
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure...
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu...
2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the...
2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construc...
2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete...
2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
2012-03-01 jprocterMerge branch 'Release_2_7_Branch' into develop
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis...
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map...
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-14 jprocterfix for JAL-930
2011-07-05 jprocterrefactor to send list of model filenames involved in...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-05-05 jprocterseparation of jmol script command generation from jmol...
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