JAL-3676 Documentation in Help for Java Console, Logging and Reporting Bugs
[jalview.git] / src / jalview / ext / rbvi /
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-18 gmungocJAL-2490 retrieve visible features only
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour
2016-12-02 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction...
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-16 gmungocJAL-2296 don't copy attribute with value False
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera...
2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply
2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) !
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction
2016-11-09 gmungocJAL-2295 set attributes commands include feature value...
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file...
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera...
2016-11-07 gmungocJAL-2295 small tidy of javadoc only
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-07-12 gmungocFileFormat enum wip changes
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label...
2016-04-04 Jim ProcterJAL-2010 refactoring todo
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'...
2016-02-09 tcofoegbuJAL-1957 deleted stale comment
2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-26 gmungocJAL-1596 check for null pointer (thread running after...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window'
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure...
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to...
2015-05-07 gmungocJAL-1575 bare bones RestHandler added
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output...
2015-05-06 gmungocJAL-1725 fix for redirect of POST to GET, debug output...
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now...
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence
2014-11-28 gmungocJAL-1596 first REST interface coded
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if...
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch...
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow...
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-11-14 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
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