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Merge branch 'bug/JAL-2750' into develop
[jalview.git]
/
src
/
jalview
/
ext
/
2015-08-03
Jim Procter
JAL-1821 JAL-1759 updated Jmol has different model...
tree
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commitdiff
2015-08-03
Jim Procter
JAL-1821 avoid race condition when multiple structures...
tree
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
tree
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commitdiff
2015-07-03
gmungoc
JAL-892 1 second delay for correct initial rendering...
tree
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commitdiff
2015-06-30
gmungoc
JAL=1759 fix Jmol state command bug; remove debug output
tree
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commitdiff
2015-06-30
gmungoc
JAL-1759 unused JmolPopup removed, code tidy for generics
tree
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commitdiff
2015-06-30
gmungoc
JAL-1759 JMol now Jmol !
tree
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commitdiff
2015-06-29
gmungoc
JAL-1759 correct conversion of Jmol Chain.chainId ...
tree
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commitdiff
2015-06-28
Jim Procter
JAl-1705 ENSEMBL cDNA type cannot be queried with pepti...
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 javadoc
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 concrete classes for different ENSEMBL sequenc...
tree
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commitdiff
2015-06-28
Jim Procter
JAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
tree
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commitdiff
2015-06-26
Jim Procter
JAL-1705 basic client & tests for rest.ensembl.org...
tree
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commitdiff
2015-06-26
gmungoc
JAL-1759 updates for Jmol 14.2.14_25.06.11
tree
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commitdiff
2015-06-18
gmungoc
JAL-892 JAL-1779 save/restore Varna viewer to/from...
tree
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commitdiff
2015-06-08
Jim Procter
JAL-1766 test and buggy implementation of fasta index...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
tree
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commitdiff
2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
tree
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commitdiff
2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-12-03
gmungoc
JAL-1609 wip on Chimera colour by sequence
tree
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commitdiff
2014-11-28
gmungoc
JAL-1596 first REST interface coded
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
tree
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commitdiff
2014-11-27
gmungoc
JAL-1603 if Chimera selected in Preferences, warn if...
tree
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 friendly name for PDB file included in secondar...
tree
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commitdiff
2014-11-26
gmungoc
JAL-1528 NullPointer check / more informative PDB fetch...
tree
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commitdiff
2014-11-21
gmungoc
JAL-1528 found and readded Colour by Chain ('rainbow...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera Help doc + fixes to setting colours
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera tidy errors, focus after align, close...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-14
gmungoc
JAL-1528 Chimera Help doc + fixes to setting colours
tree
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commitdiff
2014-11-13
gmungoc
JAL-1528 Chimera tidy errors, focus after align, close...
tree
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commitdiff
2014-11-12
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 fix imports
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 JAL-1533 todo to get Chimera superposing prope...
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 more superposition debugging and deadlock...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1333 more refinements - deadlocks still possible...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-674 futzing with bugs
tree
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commitdiff
2014-07-08
j.procter@dundee...
JAL-1333 more efficient color statement
tree
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commitdiff
2014-07-04
j.procter@dundee...
JAL-1333 more abstraction and refactoring and working...
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1476 - don't send broken commands to Jmol when...
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-07-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-07-07
Jim Procter
Merge branch 'structures/JAL-1016' into develop
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1345 - set nSeconds arg for chemapps.stolaf.edu...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 Instruct user to report situations where the...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-583 refactor todo about separating code to construc...
tree
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commitdiff
2013-07-07
Jim Procter
fix for JAL-1016 - wait around until we have a complete...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 - do our assertions immediatly
tree
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commitdiff
2013-05-26
Jim Procter
JAL-1269 RNAML returned directly from Annotate3d rather...
tree
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commitdiff
2013-05-21
Jim Procter
JAL-674 ensure annotation is properly annotated
tree
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commitdiff
2013-05-21
Jim Procter
JAL-1231 add chain ID
tree
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commitdiff
2013-05-21
Jim Procter
JAL-1231 allow Jmol file handler to read from a stream
tree
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commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2013-02-11
jprocter
upgrade to latest paradise services model using JSon...
tree
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commitdiff
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-10-24
jprocter
JAL-1193 patch prevents JalviewJmolBinding from handlin...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-09-05
jprocter
JAL-1162 catch security exception and just use bare...
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 library methods for accessing the Annotate3d...
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
tree
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commitdiff
next