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Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git] / src / jalview / ext /
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns... tree | commitdiff
2015-08-26 gmungocJAL-1596 check for null pointer (thread running after... tree | commitdiff
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback... tree | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-03 gmungocJAL-892 1 second delay for correct initial rendering... tree | commitdiff
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output tree | commitdiff
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics tree | commitdiff
2015-06-30 gmungocJAL-1759 JMol now Jmol ! tree | commitdiff
2015-06-29 gmungocJAL-1759 correct conversion of Jmol Chain.chainId ... tree | commitdiff
2015-06-28 Jim ProcterJAl-1705 ENSEMBL cDNA type cannot be queried with pepti... tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 javadoc tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 concrete classes for different ENSEMBL sequenc... tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest tree | commitdiff
2015-06-26 Jim ProcterJAL-1705 basic client & tests for rest.ensembl.org... tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... tree | commitdiff
2015-06-08 Jim ProcterJAL-1766 test and buggy implementation of fasta index... tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' tree | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-05-07 gmungocJAL-1575 bare bones RestHandler added tree | commitdiff
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output... tree | commitdiff
2015-05-06 gmungocJAL-1725 fix for redirect of POST to GET, debug output... tree | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... tree | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session tree | commitdiff
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related tree | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' tree | commitdiff
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now... tree | commitdiff
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence tree | commitdiff
2014-11-28 gmungocJAL-1596 first REST interface coded tree | commitdiff
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code tree | commitdiff
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if... tree | commitdiff
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar... tree | commitdiff
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch... tree | commitdiff
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow... tree | commitdiff
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours tree | commitdiff
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close... tree | commitdiff
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface tree | commitdiff
2014-11-14 gmungocJAL-1528 Chimera Help doc + fixes to setting colours tree | commitdiff
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close... tree | commitdiff
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface tree | commitdiff
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 fix imports tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs tree | commitdiff
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement tree | commitdiff
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... tree | commitdiff
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into develop tree | commitdiff
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the... tree | commitdiff
2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construc... tree | commitdiff
2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly tree | commitdiff
2013-05-26 Jim ProcterJAL-1269 RNAML returned directly from Annotate3d rather... tree | commitdiff
2013-05-21 Jim ProcterJAL-674 ensure annotation is properly annotated tree | commitdiff
2013-05-21 Jim ProcterJAL-1231 add chain ID tree | commitdiff
2013-05-21 Jim ProcterJAL-1231 allow Jmol file handler to read from a stream tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2013-02-11 jprocterupgrade to latest paradise services model using JSon... tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin... tree | commitdiff
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