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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ AlignFrame.java
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
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commitdiff
2020-08-17
Jim Procter
Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...
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commitdiff
2020-08-12
Ben Soares
JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
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commitdiff
2020-07-08
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
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commitdiff
2020-07-07
Ben Soares
JAL-3628 Fixed oddly worded and non-formatted error...
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commitdiff
2020-07-06
Ben Soares
JAL-3628 Even more Cache.log.debug statements
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commitdiff
2020-07-04
Jim Procter
JAL-3638 don’t move cursor to next gap after moving...
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commitdiff
2020-07-04
Jim Procter
JAL-3680 check whether a sequence selection exists...
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commitdiff
2020-07-04
Jim Procter
JAL-3638 shift+arrow keys in cursor mode jumps cursor...
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commitdiff
2020-07-04
Ben Soares
JAL-3628 More Cache.log.debug statements
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commitdiff
2020-06-29
Jim Procter
JAL-3493 clear search highlights when escape/deselect all
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commitdiff
2020-06-29
Jim Procter
JAL-3493 clear search highlights when escape/deselect all
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
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commitdiff
2020-02-21
Jim Procter
JAL-3186 avoid repainting twice in splitframe
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commitdiff
2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
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commitdiff
2020-02-20
gmungoc
JAL-3187 repaint complement after loading on features
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commitdiff
2020-02-19
Jim Procter
JAL-3187 JAL-2764 close feature settings when parent...
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating view after fetch...
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commitdiff
2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
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commitdiff
2019-04-18
hansonr
Corrects incorrect calls to ViewportRanges.setEndSeq()
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commitdiff
2019-04-16
hansonr
caching of DnD files dropped
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
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commitdiff
2019-03-31
hansonr
clean up implicit object refs
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commitdiff
2019-03-27
hansonr
isJS cleanup
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commitdiff
2019-03-23
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2019-03-23
gmungoc
JAL-1889 explicit recalc of geometry for scale left...
bug/JAL-1889serverTestSuite
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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commitdiff
2019-03-20
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2019-03-20
gmungoc
JAL-3093 fine tuning of SeqPanel tooltip
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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commitdiff
2019-03-14
gmungoc
JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS
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commitdiff
2019-03-13
gmungoc
JAL-3141 fix up merge artefact so BackupFilesTest passes
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
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commitdiff
2019-03-07
gmungoc
Merge branch 'feature/JAL-3180colourAnnotationMenu...
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commitdiff
2019-03-07
gmungoc
JAL-2250 default Apply Colour to All Groups selected
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3158selectionBroadcasts' into...
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commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
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commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
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commitdiff
2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
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commitdiff
2019-02-05
gmungoc
JAL-3048 JS-compatible confirm dialog on delete all
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
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commitdiff
2019-01-18
hansonr
canvas line/font/pixel fixes; menu accelerators;
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commitdiff
2019-01-15
hansonr
removal of AlignmentFrame lines
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commitdiff
2019-01-09
gmungoc
JAL-3032 refine 'empty status message' test (JS issue...
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commitdiff
2019-01-09
hansonr
comment added in relation to status bar
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commitdiff
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
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commitdiff
2018-12-18
gmungoc
JAL-3048 DialogRunnerI reduced to minimal implementation
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commitdiff
2018-12-14
Ben Soares
JAL-3130 single class testing on CLI with ant [ -Dclass...
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commitdiff
2018-12-10
gmungoc
JAL-3048 wip externalise trigger from RunResponse
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commitdiff
2018-12-10
gmungoc
JAL-3048 DialogRunner changes (wip)
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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commitdiff
2018-12-06
gmungoc
JAL-3048 response() renamed addResponse(); checkstyle...
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commitdiff
2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
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commitdiff
2018-11-08
gmungoc
JAL-3048 use JalviewJS compatible JalviewFileChooser...
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commitdiff
2018-11-05
Ben Soares
JAL-1988 Investigating...
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commitdiff
2018-10-31
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into...
feature/JAL-3144noJTree
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commitdiff
2018-10-29
gmungoc
JAL-3144 SequenceFetcher without JDatabaseTree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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commitdiff
2018-09-11
gmungoc
JAL-3048 recoded edit View Name dialog for JalviewJS
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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commitdiff
2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
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commitdiff
2018-08-27
hansonr
JAL-3026 alignmentFrame.statusBar.setText -> .setStatus
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commitdiff
2018-08-24
hansonr
JAL-3026 Java bug associated with File/String mods
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commitdiff
2018-08-17
gmungoc
JAL-3048 remove obsolete way of handling dialogs in...
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commitdiff
2018-08-14
gmungoc
JAL-3032 tidy AlignmentProperties display for JalviewJS
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commitdiff
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
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commitdiff
2018-07-19
gmungoc
JAL-3048 inlined 1-line methods, small refactor of...
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commitdiff
2018-07-19
gmungoc
JAL-3048 revert saveAs action so it works in Javascript too
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commitdiff
2018-07-11
Jim Procter
JAL-3026 JLabel for alignment properties in jalview-js
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commitdiff
2018-07-11
Jim Procter
Merge branch 'Jalview-BH/JAL-3048_exportSettingsrefacto...
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commitdiff
2018-07-11
Jim Procter
JAL-1551 formatting
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commitdiff
2018-07-11
Jim Procter
JAL-3048 refactored export settings to bean+dialog...
Jalview-BH/JAL-3048_exportSettingsrefactor
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commitdiff
2018-07-10
Jim Procter
Merge branch 'Jalview-BH/JAL-3026' of source.jalview...
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