Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui / AlignFrame.java
2023-01-30 Jim ProcterMerge branch 'JAL-3878_ws-overhaul-3' into with_ws_over...
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF...
2021-09-15 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
2021-07-25 Jim ProcterJAL-3848 reinstate Fetch DB References submenu
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs.
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-12-11 MateuszJAL-3690 Let's enable web services (seriously this...
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit
2020-11-13 Mateusz WaronwyJAL-3690 separate startup and poll code in SeqAnnotatio...
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved...
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL...
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-07-20 Mateusz WarownyJAL-3690 alternative servers menu fix
2020-07-17 Mateusz WarownyJAL-3690 restore jws1 JPred
2020-07-15 Mateusz WarownyJAL-3690 refactoring web-services discovery
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving...
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists...
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor...
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into...
2020-06-12 BobHansonJAL-3446 from applet -- reload; also fixes some repaint...
2020-06-10 BobHansonJAL-3645 errant "g" in JavaDoc
2020-06-10 BobHansonJAL-3446 Dynamic menu - Moves calc sortby tree item...
2020-06-09 BobHansonJAL-3446 from applet; JAL-3374
2020-06-07 BobHansonJAL-3446 reorganized JalviewJSApp (accidentally put...
2020-06-07 BobHansonreorganized JalviewJSApp (accidentally put that in...
2020-06-06 BobHansonJAL-3446 no actual changes; just using meaningful frame...
2020-06-06 BobHansonJAL-3446 adds Jmol viewer embedding.
2020-06-05 BobHansonJAL-3446 removes all JalviewJSApp dependency from jalvi...
2020-06-05 BobHansonRefactoring of Jalview, JalviewAppLoader, JalviewApp...
2020-06-03 BobHansonJAL-3446 from JAL-3253 Discoverers
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet web page embedding
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet JalviewLite scrollTo...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_...
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
2020-02-20 gmungocJAL-3187 repaint complement after loading on features
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent...
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings...
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature...
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera...
2020-02-04 MMWarownyJAL-3515 Extract core WSDiscoverer methods to a separat...
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more...
2019-10-03 Jim ProcterJAL-3070 slivka service discovery as a background threa...
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service...
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system.
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-07-15 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-12 ThomasJAL-2629 add sort by evalue and bit score
2019-07-11 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
2019-07-10 tvaJAL-2629 fix incorrect hmmbuild on groups behaviour
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit...
2019-07-02 tvaJAL-2629 add simple jackhmmer functionality
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating view after fetch...
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove...
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq()
2019-04-16 hansonrcaching of DnD files dropped
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