JAL-2668 fix broken factory method for colour scheme
[jalview.git] / src / jalview / gui / AlignViewport.java
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose...
2017-09-05 gmungocJAL-2225 unused collateForPdb removed
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-21 kiramtJAL-2388 Made ViewportRanges final
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-08 gmungocJAL-2435 copy font changes across split screen
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 license header
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 gmungocJAL-1854 removed pointless method override
2016-07-11 gmungocfile format enum wip changes
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output...
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding...
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings'
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread...
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-07-01 gmungocJAL-1619 align the added sequences to match what they...
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb()
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-11 James ProcterJAL-1690 make splitframe enabled by default
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure...
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