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[jalview.git] / src / jalview / gui / AlignViewport.java

2018-02-20	gmungoc	Merge branch 'develop' into features/mchmmer	blob \| commitdiff
2017-11-15	gmungoc	JAL-2835 spike updated with latest	blob \| commitdiff \| diff to current
2017-11-08	Jim Procter	Merge branch 'develop' into bug/JAL-2225mapMultipleChains	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 null more fields in AlignmentViewport.dispose...	blob \| commitdiff \| diff to current
2017-09-05	gmungoc	JAL-2225 unused collateForPdb removed	blob \| commitdiff \| diff to current
2017-08-18	TZVanaalten	Merge branch 'develop' into features/hmmer	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-08-10	TZVanaalten	JAL-2629 hmmalign now correctly creates a new frame	blob \| commitdiff \| diff to current
2017-08-04	TZVanaalten	JAL-2629 multiple HMMs can now be dropped onto an alignment	blob \| commitdiff \| diff to current
2017-08-02	TZVanaalten	JAL-2599 fix for information annotation buttons	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-14	TZVanaalten	add partial button fix to annotation and statistics... features/hmmer_statistics	blob \| commitdiff \| diff to current
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copyi...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 More working split panel + new scrolling	blob \| commitdiff \| diff to current
2017-04-28	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 use constant for preference token	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-23	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-03-21	kiramt	JAL-2388 Made ViewportRanges final	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2435 copy font changes across split screen	blob \| commitdiff \| diff to current
2017-03-07	kiramt	JAL-2388 Missed commit	blob \| commitdiff \| diff to current
2017-03-06	kiramt	JAL-2388 Dependency tidy	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
2017-03-03	kiramt	JAL-2388 Initial removal of hidden cols/seqs out of...	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Reverted to previous	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Preliminary refactor check-in, does not compile	blob \| commitdiff \| diff to current
2017-02-28	kiramt	JAL-2388 First move of endRes etc out of AlignmentViewp...	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-21	kiramt	Merge branch 'develop' into features/JAL-2388OverviewWindow	blob \| commitdiff \| diff to current
2017-02-14	kiramt	JAL-2388 Removed unnecessary CommandListener interface...	blob \| commitdiff \| diff to current
2017-02-10	gmungoc	JAL-2371 small move of code, typo correction	blob \| commitdiff \| diff to current
2017-02-09	gmungoc	JAL-2371 ensure some colour scheme (may be None) is...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2385 more tests/bug fixes mostly for gui.SliderPane...	blob \| commitdiff \| diff to current
2017-01-27	gmungoc	JAL-2371 CollectionColourScheme renamed ResidueShader...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 getColour() renamed to getColourScheme(),...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 license header	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 new dispose() method to null references	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-08-24	gmungoc	JAL-1854 removed pointless method override	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-06-08	tcofoegbu	JAL-1479 JAL- Fix to eradicate duplicate mapping output...	blob \| commitdiff \| diff to current
2016-04-04	Jim Procter	JAL-969 refactor columnselection operation (during...	blob \| commitdiff \| diff to current
2016-03-15	gmungoc	JAL-2016 FeatureSettingsI now FeatureSettingsModelI	blob \| commitdiff \| diff to current
2016-02-22	gmungoc	JAL-1705 first pass at applying preset feature colourin...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 realise virtual mappings and align when adding...	blob \| commitdiff \| diff to current
2015-12-03	gmungoc	JAL-653 code tidy / tests for 'realise gff mappings'	blob \| commitdiff \| diff to current
2015-11-30	gmungoc	JAL-653 (experimental) 'realise' dummy sequences in...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-02	gmungoc	JAL-1815 restore split frame geometry including horizon...	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1830 dropped reference counts for mappings, instead...	blob \| commitdiff \| diff to current
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-08-05	Jim Procter	JAL-1822 create dataset sequences if they aren’t alread...	blob \| commitdiff \| diff to current
2015-07-03	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	JAL-1619 align the added sequences to match what they...	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1691 trackpad scrolling goes to full width even...	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	blob \| commitdiff \| diff to current
2015-06-18	gmungoc	JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop	blob \| commitdiff \| diff to current
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile	blob \| commitdiff \| diff to current
2015-06-10	tcofoegbu	JAL-1641 updated applet version	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1622 code tidy (+Junit) of collateForPdb()	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-05-11	James Procter	JAL-1690 make splitframe enabled by default	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-23	gmungoc	JAL-1681 create mappings before AlignFrame to ensure...	blob \| commitdiff \| diff to current
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