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[jalview.git] / src / jalview / gui / AlignmentPanel.java

2017-03-31	gmungoc	Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-15	gmungoc	JAL-2431 show cDNA consensus after New View in split...	blob \| commitdiff \| diff to current
2017-03-14	kiramt	JAL-2439 Fixes to out-by-one sequence indexing in gui...	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-23	kiramt	JAL-2388 Unit tests in progress	blob \| commitdiff \| diff to current
2017-02-21	kiramt	Merge branch 'bug/JAL-2421overviewboxflicker' into	blob \| commitdiff \| diff to current
2017-02-21	kiramt	JAL-2421 Unit test	blob \| commitdiff \| diff to current
2017-02-17	kiramt	JAL-2388 Incomplete unit tests	blob \| commitdiff \| diff to current
2017-02-17	kiramt	JAL-2421 Fix to alignment panel scroll values, and...	blob \| commitdiff \| diff to current
2016-11-23	Jim Procter	Merge branch 'bug/JAL-2323disulfideOverview' into develop	blob \| commitdiff \| diff to current
2016-11-22	tcofoegbu	Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...	blob \| commitdiff \| diff to current
2016-11-22	gmungoc	JAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped	blob \| commitdiff \| diff to current
2016-11-22	Jim Procter	Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...	blob \| commitdiff \| diff to current
2016-11-22	gmungoc	JAL-2277 refactored AlignmentPanel.printUnwrapped to...	blob \| commitdiff \| diff to current
2016-11-21	tcofoegbu	JAL-2277 bug fix for mis-alligned graphics output for...	blob \| commitdiff \| diff to current
2016-11-17	gmungoc	JAL-2327 disulfide bond abstracted to SequenceFeature...	blob \| commitdiff \| diff to current
2016-11-11	tcofoegbu	JAL-2277 Refactored out duplicated method - printUnwrap...	blob \| commitdiff \| diff to current
2016-11-04	gmungoc	JAL-966 JAL-1854 removed redundant methods / modifiers...	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 explicitly null AnnotationPanel and Annotation...	blob \| commitdiff \| diff to current
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	blob \| commitdiff \| diff to current
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-02	gmungoc	JAL-1815 restore split frame geometry including horizon...	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-21	gmungoc	JAL-1799 update height of annotation labels to match...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-03	Jim Procter	JAL-961 efficiency TODO: decouple overview updates...	blob \| commitdiff \| diff to current
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	blob \| commitdiff \| diff to current
2015-08-17	gmungoc	JAL-1691 scan full width and depth of alignment for...	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	JAL-1799 deduct more space for decorators on Windows	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1691 trackpad scrolling goes to full width even...	blob \| commitdiff \| diff to current
2015-06-29	gmungoc	JAL-1799 adjusted annotation height calculation	blob \| commitdiff \| diff to current
2015-05-01	gmungoc	JAL-1690 refining 'copy format from' as applied to...	blob \| commitdiff \| diff to current
2015-04-27	gmungoc	JAL-1691 more stable linked scrolling across split...	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-04-07	gmungoc	JAL-1691 linked scrollling in split frame (Desktop)	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 merge commit	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Change the Html export to utilize svg	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-966 promote getName to an api method	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1482 feature renderer and manipulation code refacto...	blob \| commitdiff \| diff to current
2014-06-13	Jim Procter	Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-967 JAL-1482 new feature renderer api - needs more...	blob \| commitdiff \| diff to current
2014-04-04	Jim Procter	JAL-1211 - set annotation panel height according to...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-06-13	Jim Procter	fix for JAL-1315	blob \| commitdiff \| diff to current
2013-05-24	Jim Procter	JAL-1291 reinstate fastPaint flag manipulation to make...	blob \| commitdiff \| diff to current
2013-05-24	Jim Procter	JAL-1161 only trigger an annotation repaint in unwrappe...	blob \| commitdiff \| diff to current
2013-05-24	Jim Procter	JAL-1161 enable fastPaint for nudges from scroll bars...	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 JAL-966 refactor group/alignment associated...	blob \| commitdiff \| diff to current
2012-09-06	jprocter	JAL-958 flag indicating if visualization settings for...	blob \| commitdiff \| diff to current
2012-07-02	jprocter	JAL-1129 progress bar - this patch doesn't provide...	blob \| commitdiff \| diff to current
2012-07-02	jprocter	JAL-968 incremental - PNG/EPS output has annotation...	blob \| commitdiff \| diff to current
2012-07-02	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-07-02	jprocter	JAL-974 - refactor FeatureRenderer constructor to Align...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-11-09	jprocter	Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws...	blob \| commitdiff \| diff to current
2011-11-09	jprocter	Merge branch 'JAL-986_idwidthprefs' into develop	blob \| commitdiff \| diff to current
2011-11-09	jprocter	(JAL-986) rendering to imageMap counts as rendering...	blob \| commitdiff \| diff to current
2011-11-09	jprocter	Merge branch 'JAL-986_idwidthprefs' into develop	blob \| commitdiff \| diff to current
2011-11-09	jprocter	(JAL-985,JAL-986) allow different ID margin calculation...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	extend alignPanel api with OOMHandler call to raise...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	remove unnecessary import	blob \| commitdiff \| diff to current
2011-10-14	jprocter	(JAL-958) - normalised sequence logo for applet	blob \| commitdiff \| diff to current
2011-10-11	jprocter	normalised logo rendering (JAL-958)	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-22	jprocter	ensure propagation of colour change on annotation updat...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-04-21	jprocter	separated alignment annotation height calculation from...	blob \| commitdiff \| diff to current
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