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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
gui
/
ChimeraViewFrame.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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diff to current
2022-03-02
Jim Procter
JAL-3619 fix up error messages and try to bail quietly...
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diff to current
2022-03-02
Jim Procter
JAL-3619 fix up warning message and minimal patch to...
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diff to current
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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diff to current
2021-12-08
Jim Procter
JAL-3616 update messages/tooltips/menu items to use...
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diff to current
2021-10-18
Jim Procter
JAL-3904 override buildActionMenu to add in additional...
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diff to current
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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diff to current
2020-06-29
gmungoc
JAL-3518 corrected pulled up focusView() command
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diff to current
2020-06-25
gmungoc
JAL-3518 pull up [get|list]ResidueAttributes to Structu...
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diff to current
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
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diff to current
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
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diff to current
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
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diff to current
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
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diff to current
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
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diff to current
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
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diff to current
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
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diff to current
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
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diff to current
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
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diff to current
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
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diff to current
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
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diff to current
2020-02-06
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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commitdiff
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diff to current
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
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diff to current
2020-01-31
gmungoc
JAL-2422 temporary hacks removed; use hex colours for...
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diff to current
2020-01-30
gmungoc
JAL-2422 save/restore ChimeraX session
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commitdiff
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2020-01-14
gmungoc
JAL-2422 proof of concept adaptations for ChimeraX...
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
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2018-07-23
gmungoc
JAL-3048 all image export (alignment, tree, PCA, Jmol...
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2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
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commitdiff
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2018-04-12
gmungoc
JAL-2944 tidies for review comments
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diff to current
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
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diff to current
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
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diff to current
2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
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2017-05-01
tcofoegbu
JAL-2465 missed commit for refactore renaming of getPdb...
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2017-03-21
gmungoc
JAL-2243 update discovered features on opening structur...
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2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
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diff to current
2017-03-02
gmungoc
JAL-2295 make 'Jmol' menu appear; enable/disable Superp...
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2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
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2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
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2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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diff to current
2016-12-12
gmungoc
JAL-1544 backgroud -> background
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2016-12-08
gmungoc
Merge branch 'bug/JAL-2358phantomChimera' into spikes...
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2016-12-08
gmungoc
JAL-2358 ensure mappings removed on close Chimera;...
bug/JAL-2358phantomChimera
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2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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diff to current
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
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commitdiff
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2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
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diff to current
2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
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commitdiff
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diff to current
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
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commitdiff
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diff to current
2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
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diff to current
2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attri...
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commitdiff
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diff to current
2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
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commitdiff
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diff to current
2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
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diff to current
2016-10-13
gmungoc
JAL-2044 include model name in progress bar message...
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-09-07
Jim Procter
JAL-2191 comments re chimera view code redundancy and...
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commitdiff
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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diff to current
2016-03-24
gmungoc
JAL-1705 removed experimental 'highlight selection...
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2016-02-12
gmungoc
JAL-2010 simple prototype of 'Highlight Selection'...
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-09-04
Jim Procter
JAL-1847 added AUTOSUPERIMPOSE property which can be...
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diff to current
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
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commitdiff
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diff to current
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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commitdiff
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diff to current
2015-06-18
gmungoc
JAL-1544 typos in comments
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diff to current
2015-06-10
gmungoc
JAL-1764 save Chimera/Jmol state as separate entries...
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diff to current
2015-06-05
gmungoc
JAL-1588 error dialog if Chimera project opened on...
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diff to current
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
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commitdiff
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diff to current
2015-06-05
gmungoc
JAL-1746 return empty string rather than null in getSta...
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diff to current
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
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commitdiff
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diff to current
2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
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commitdiff
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diff to current
2015-06-04
gmungoc
JAL-1743 View Chain sub-menu now being populated
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commitdiff
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diff to current
2015-06-04
gmungoc
JAL-1753 ChimeraViewFrame hosts its own ProgressBar
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commitdiff
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diff to current
2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
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commitdiff
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diff to current
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
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commitdiff
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diff to current
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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diff to current
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
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commitdiff
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diff to current
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
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commitdiff
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diff to current
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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commitdiff
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diff to current
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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commitdiff
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diff to current
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
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